FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1691, 200 aa
  1>>>pF1KE1691 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0774+/-0.000626; mu= 15.0673+/- 0.038
 mean_var=65.2476+/-12.587, 0's: 0 Z-trim(110.9): 10  B-trim: 0 in 0/54
 Lambda= 0.158779
 statistics sampled from 11952 (11959) to 11952 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19       ( 200) 1352 317.7 3.1e-87
CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19       ( 196) 1268 298.4 1.9e-81
CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19       ( 200)  884 210.4 5.8e-55


>>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19            (200 aa)
 initn: 1352 init1: 1352 opt: 1352  Z-score: 1679.6  bits: 317.7 E(32554): 3.1e-87
Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
              130       140       150       160       170       180

              190       200
pF1KE1 NLFRLLTRDLNCVASGDLCV
       ::::::::::::::::::::
CCDS42 NLFRLLTRDLNCVASGDLCV
              190       200

>>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19            (196 aa)
 initn: 1268 init1: 1268 opt: 1268  Z-score: 1575.8  bits: 298.4 E(32554): 1.9e-81
Smith-Waterman score: 1268; 95.9% identity (99.0% similar) in 196 aa overlap (5-200:1-196)

               10        20        30        40        50        60
pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
           ::::: :::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS12     MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
       :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: 
CCDS12 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
       ::::::::::::::::.::::::::::::::::::::::.::::::::::::::::::::
CCDS12 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF
        120       130       140       150       160       170      

              190       200
pF1KE1 NLFRLLTRDLNCVASGDLCV
       ::::::::::::::::::::
CCDS12 NLFRLLTRDLNCVASGDLCV
        180       190      

>>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19            (200 aa)
 initn: 930 init1: 509 opt: 884  Z-score: 1100.2  bits: 210.4 E(32554): 5.8e-55
Smith-Waterman score: 884; 72.3% identity (85.9% similar) in 191 aa overlap (10-200:6-191)

               10        20        30        40        50        60
pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
                : ::: ..  :.:.: ::...       ..::::..::::::::: .::.:
CCDS12     MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKA
                   10        20           30        40        50   

               70        80        90       100       110       120
pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
       .::::::: ::.  : : .:: .:::: :::::::.:::::::::::::::.:   ::: 
CCDS12 RDALEESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALE
            60        70        80        90       100         110 

              130       140       150       160       170       180
pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
       ::::::::::::::::..:::::::::::: ::::::::.:::::::::: :::::::::
CCDS12 DVLDQPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTF
             120       130       140       150       160       170 

              190       200         
pF1KE1 NLFRLLTRDLNCVASGDLCV         
       ::::::::::. ::.:.::.         
CCDS12 NLFRLLTRDLKYVADGNLCLRTSTHPEST
             180       190       200




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:48:39 2016 done: Sat Nov  5 22:48:40 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]