FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1690, 200 aa
  1>>>pF1KE1690 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7276+/-0.000393; mu= 16.1356+/- 0.025
 mean_var=58.0443+/-11.711, 0's: 0 Z-trim(112.1): 13  B-trim: 533 in 2/53
 Lambda= 0.168343
 statistics sampled from 20832 (20842) to 20832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.244), width:  16
 Scan time:  5.680

The best scores are:                                      opt bits E(85289)
NP_000605 (OMIM: 118945) ciliary neurotrophic fact ( 200) 1326 330.2 1.4e-90


>>NP_000605 (OMIM: 118945) ciliary neurotrophic factor [  (200 aa)
 initn: 1326 init1: 1326 opt: 1326  Z-score: 1747.4  bits: 330.2 E(85289): 1.4e-90
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KE1 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS
              130       140       150       160       170       180

              190       200
pF1KE1 SHQTGIPARGSHYIANNKKM
       ::::::::::::::::::::
NP_000 SHQTGIPARGSHYIANNKKM
              190       200




200 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:49:34 2016 done: Mon Nov  7 18:49:35 2016
 Total Scan time:  5.680 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]