FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1688, 199 aa
  1>>>pF1KE1688 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6172+/-0.000783; mu= 16.8137+/- 0.047
 mean_var=61.0777+/-12.531, 0's: 0 Z-trim(107.5): 11  B-trim: 32 in 1/48
 Lambda= 0.164109
 statistics sampled from 9622 (9628) to 9622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS2363.1 ICOS gene_id:29851|Hs108|chr2           ( 199) 1382 335.3 1.5e-92


>>CCDS2363.1 ICOS gene_id:29851|Hs108|chr2                (199 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1775.1  bits: 335.3 E(32554): 1.5e-92
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY
              130       140       150       160       170       180

              190         
pF1KE1 MFMRAVNTAKKSRLTDVTL
       :::::::::::::::::::
CCDS23 MFMRAVNTAKKSRLTDVTL
              190         




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:14:42 2016 done: Sun Nov  6 21:14:42 2016
 Total Scan time:  1.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]