FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1685, 197 aa
  1>>>pF1KE1685 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3721+/-0.000583; mu= 13.8495+/- 0.035
 mean_var=74.4602+/-14.854, 0's: 0 Z-trim(113.4): 12  B-trim: 10 in 1/53
 Lambda= 0.148632
 statistics sampled from 14073 (14083) to 14073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.433), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS42217.1 IL17C gene_id:27189|Hs108|chr16        ( 197) 1393 306.9 5.1e-84
CCDS9292.1 IL17D gene_id:53342|Hs108|chr13         ( 202)  272 66.6 1.2e-11


>>CCDS42217.1 IL17C gene_id:27189|Hs108|chr16             (197 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1621.9  bits: 306.9 E(32554): 5.1e-84
Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE1 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MTLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQAPPHLLARGAKWGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEADTHQRSISPWRYRVDTDEDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFAFHT
              130       140       150       160       170       180

              190       
pF1KE1 EFIHVPVGCTCVLPRSV
       :::::::::::::::::
CCDS42 EFIHVPVGCTCVLPRSV
              190       

>>CCDS9292.1 IL17D gene_id:53342|Hs108|chr13              (202 aa)
 initn: 285 init1: 203 opt: 272  Z-score: 322.7  bits: 66.6 E(32554): 1.2e-11
Smith-Waterman score: 272; 32.7% identity (59.4% similar) in 165 aa overlap (32-192:17-170)

              10        20        30        40          50         
pF1KE1 TLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQA--PPHLLARGAKWG
                                     :.:.       : : :  : .:: .   .:
CCDS92               MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQ--LYG
                             10        20        30        40      

      60        70        80        90         100       110       
pF1KE1 QALPVALVSSLEAASHRGRHERPSATTQCPVL-RP-EEVLEADTHQRSISPWRYRVDTDE
       . : ....:... . . : .:.   .. ::.  :: .. ..  :. ::.::: ::.. : 
CCDS92 R-LAAGVLSAFHHTLQLGPREQARNAS-CPAGGRPADRRFRPPTNLRSVSPWAYRISYDP
            50        60        70         80        90       100  

       120       130       140       150       160       170       
pF1KE1 DRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRPCSRDGSGLPTPGAFA
        :::. :  : ::::::. .  :.: . . :. . .  .:::: :    : .. : .   
CCDS92 ARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEA---
            110       120       130       140       150            

       180       190                                  
pF1KE1 FHTEFIHVPVGCTCVLPRSV                           
           .. .:::::::                                
CCDS92 ----YVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP
         160       170       180       190       200  




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:26:43 2016 done: Mon Nov  7 15:26:43 2016
 Total Scan time:  2.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]