FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1683, 196 aa
  1>>>pF1KE1683 196 - 196 aa - 196 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0465+/-0.000269; mu= 2.6702+/- 0.017
 mean_var=181.5415+/-37.854, 0's: 0 Z-trim(125.4): 6  B-trim: 939 in 2/59
 Lambda= 0.095189
 statistics sampled from 49019 (49029) to 49019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.575), width:  16
 Scan time:  7.790

The best scores are:                                      opt bits E(85289)
XP_016868582 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48
XP_016868581 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48
XP_016868580 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48
XP_016868579 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48
NP_000747 (OMIM: 122560) corticoliberin preproprot ( 196) 1312 190.8 1.2e-48


>>XP_016868582 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 994.6  bits: 190.8 E(85289): 1.2e-48
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
XP_016 AQQAHSNRKLMEIIGK
              190      

>>XP_016868581 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 994.6  bits: 190.8 E(85289): 1.2e-48
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
XP_016 AQQAHSNRKLMEIIGK
              190      

>>XP_016868580 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 994.6  bits: 190.8 E(85289): 1.2e-48
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
XP_016 AQQAHSNRKLMEIIGK
              190      

>>XP_016868579 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 994.6  bits: 190.8 E(85289): 1.2e-48
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
XP_016 AQQAHSNRKLMEIIGK
              190      

>>NP_000747 (OMIM: 122560) corticoliberin preproprotein   (196 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 994.6  bits: 190.8 E(85289): 1.2e-48
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
              130       140       150       160       170       180

              190      
pF1KE1 AQQAHSNRKLMEIIGK
       ::::::::::::::::
NP_000 AQQAHSNRKLMEIIGK
              190      




196 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:07:29 2016 done: Sun Nov  6 16:07:30 2016
 Total Scan time:  7.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]