Result of FASTA (ccds) for
pFN21AE1682
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1682, 196 aa
1>>>pF1KE1682 196 - 196 aa - 196 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8931+/-0.000693; mu= 15.8326+/- 0.042
mean_var=67.3948+/-13.647, 0's: 0 Z-trim(110.0): 11 B-trim: 600 in 1/51
Lambda= 0.156229
statistics sampled from 11262 (11267) to 11262 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.346), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS12680.1 PGLYRP1 gene_id:8993|Hs108|chr19 ( 196) 1391 321.7 1.8e-88
CCDS30871.1 PGLYRP4 gene_id:57115|Hs108|chr1 ( 373) 552 132.8 2.4e-31
CCDS12330.2 PGLYRP2 gene_id:114770|Hs108|chr19 ( 576) 470 114.5 1.2e-25
CCDS1035.1 PGLYRP3 gene_id:114771|Hs108|chr1 ( 341) 420 103.1 2.1e-22
>>CCDS12680.1 PGLYRP1 gene_id:8993|Hs108|chr19 (196 aa)
initn: 1391 init1: 1391 opt: 1391 Z-score: 1701.9 bits: 321.7 E(32554): 1.8e-88
Smith-Waterman score: 1391; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KE1 MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG
130 140 150 160 170 180
190
pF1KE1 NQLYHLIQNWPHYRSP
::::::::::::::::
CCDS12 NQLYHLIQNWPHYRSP
190
>>CCDS30871.1 PGLYRP4 gene_id:57115|Hs108|chr1 (373 aa)
initn: 483 init1: 253 opt: 552 Z-score: 676.1 bits: 132.8 E(32554): 2.4e-31
Smith-Waterman score: 552; 41.8% identity (69.5% similar) in 177 aa overlap (18-194:198-372)
10 20 30 40
pF1KE1 MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECA
:. :.: : .:::. : : ..:
CCDS30 AMENLITYAVQKGHLSSSYVQPLLGKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCP
170 180 190 200 210 220
50 60 70 80 90 100
pF1KE1 QHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYE
. ..:: .: .. :::: .:: :. .:..: ... : ::.:::::.:.:: .::
CCDS30 R-MTLPAKYGIIIHTAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYE
230 240 250 260 270 280
110 120 130 140 150 160
pF1KE1 GRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVL
: ::: :. : .. ...::.:::.. :. :..::: :. :....: : ::.:
CCDS30 GVGWNVQGS-STPGYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLL
290 300 310 320 330 340
170 180 190
pF1KE1 KGHRDVQRTLSPGNQLYHLIQNWPHYRSP
:: :: ::::::. ::..:..:::..
CCDS30 VGHSDVARTLSPGQALYNIISTWPHFKH
350 360 370
>--
initn: 190 init1: 154 opt: 376 Z-score: 461.7 bits: 93.2 E(32554): 2.1e-19
Smith-Waterman score: 376; 38.5% identity (68.9% similar) in 148 aa overlap (21-166:41-187)
10 20 30 40
pF1KE1 MSRRSMLLAWALPSLLRLGAAQETED--PACCSPIVPRNEWKALASECAQ
.: :: :. : : :. : : : :.
CCDS30 LGIQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSRKAWGAEAVGCSI
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE1 HLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEG
.:. :. .:. :. : :. . :.:. :..: .:... . :::.::::.:.:: ::::
CCDS30 QLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYNFLVGDDGRVYEG
80 90 100 110 120 130
110 120 130 140 150 160
pF1KE1 RGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLK
:::. :.:. . .: .:.:..:.:. . :.: :. : ..:.. .: .: : :.::
CCDS30 VGWNIQGVHT-QGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQKGHLSSSYVQP
140 150 160 170 180
170 180 190
pF1KE1 GHRDVQRTLSPGNQLYHLIQNWPHYRSP
CCDS30 LLGKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCPRMTLPAKYGIIIHTAGRTCNIS
190 200 210 220 230 240
>>CCDS12330.2 PGLYRP2 gene_id:114770|Hs108|chr19 (576 aa)
initn: 379 init1: 312 opt: 470 Z-score: 573.6 bits: 114.5 E(32554): 1.2e-25
Smith-Waterman score: 470; 41.1% identity (67.2% similar) in 180 aa overlap (20-193:368-545)
10 20 30 40
pF1KE1 MSRRSMLLAWALPSLLRLGAAQE-TEDPACCSPIVPRNEWKALASEC-A
:..: :: : : :: .: : .
CCDS12 GTLVLLQRLEPVHLQLQCMSQEQLAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRP
340 350 360 370 380 390
50 60 70 80 90 100
pF1KE1 QHLSLPLRYVVVSHT--AGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLV
. :.::: .. : :: . :. . : . :..:.::. : :: :.::.:..: :: :
CCDS12 KLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYV
400 410 420 430 440 450
110 120 130 140 150 160
pF1KE1 YEGRGWNFTGAHS-GHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL-ACGVAQGALRS
::::::...:::. :: : ..:....::: .:: :.:... : .:.: : ::
CCDS12 YEGRGWHWVGAHTLGH--NSRGFGVAIVGNYTAALPTEAALRTVRDTLPSCAVRAGLLRP
460 470 480 490 500 510
170 180 190
pF1KE1 NYVLKGHRDVQRTLSPGNQLYHLIQNWPHYRSP
.:.: :::.. :: ::. :. :...:::.
CCDS12 DYALLGHRQLVRTDCPGDALFDLLRTWPHFTATVKPRPARSVSKRSRREPPPRTLPATDL
520 530 540 550 560 570
>>CCDS1035.1 PGLYRP3 gene_id:114771|Hs108|chr1 (341 aa)
initn: 624 init1: 305 opt: 420 Z-score: 515.8 bits: 103.1 E(32554): 2.1e-22
Smith-Waterman score: 582; 41.4% identity (73.7% similar) in 186 aa overlap (13-194:157-340)
10 20 30
pF1KE1 MSRRSMLLAWALPSLLRLGAAQETEDPA----CCSPIVPRNE
: ::. . . . :. : :. :.
CCDS10 SSPSPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPNIIKRSA
130 140 150 160 170 180
40 50 60 70 80 90
pF1KE1 WKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFL
:.: ..: . ..:: .::.. ::::.::.. ..:: .::.: .:: : ..::.::.::
CCDS10 WEARETHCPK-MNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFL
190 200 210 220 230 240
100 110 120 130 140 150
pF1KE1 IGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQ
.:.:: :::: ::.. :.:. . .: ...::.:.: .... :. :..::: :. :.:..
CCDS10 VGQDGGVYEGVGWHIQGSHT-YGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVE
250 260 270 280 290 300
160 170 180 190
pF1KE1 GALRSNYVLKGHRDVQRTLSPGNQLYHLIQNWPHYRSP
: : ::.: :: :: ::::. ::..:..:::..
CCDS10 GYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH
310 320 330 340
>--
initn: 631 init1: 305 opt: 420 Z-score: 515.8 bits: 103.1 E(32554): 2.1e-22
Smith-Waterman score: 420; 39.6% identity (66.7% similar) in 159 aa overlap (8-166:4-155)
10 20 30 40 50 60
pF1KE1 MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS
: : : .. :: : . :. :: :.:: : : :.::. :....
CCDS10 MGTLPWLLAFFI-LGL-QAWDTPT----IVSRKEWGARPLACRALLTLPVAYIITD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH
. : .:. . :.:. :..: . . :.:::::.::::.:.:: :::: :::. : :. .
CCDS10 QLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNIQGLHT-Q
60 70 80 90 100
130 140 150 160 170 180
pF1KE1 LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG
.: .:.::.:.:: . :.: :. ::.::.. .. .: : :.
CCDS10 GYNNISLGIAFFGNKIGSSPSPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQ
110 120 130 140 150 160
190
pF1KE1 NQLYHLIQNWPHYRSP
CCDS10 HPVMPRKVCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQS
170 180 190 200 210 220
196 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:20:42 2016 done: Sun Nov 6 13:20:43 2016
Total Scan time: 2.040 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]