FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1679, 193 aa
  1>>>pF1KE1679 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4099+/-0.000648; mu= 7.8652+/- 0.040
 mean_var=175.1299+/-34.706, 0's: 0 Z-trim(118.2): 39  B-trim: 0 in 0/54
 Lambda= 0.096916
 statistics sampled from 19095 (19138) to 19095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.588), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11           ( 193) 1297 191.6 2.6e-49
CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12          ( 236)  423 69.5 1.8e-12


>>CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11                (193 aa)
 initn: 1297 init1: 1297 opt: 1297  Z-score: 998.8  bits: 191.6 E(32554): 2.6e-49
Smith-Waterman score: 1297; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGAAAVARRNERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGAAAVARRNERER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCEGALSPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCEGALSPAE
              130       140       150       160       170       180

              190   
pF1KE1 RELLDFSSWLGGY
       :::::::::::::
CCDS77 RELLDFSSWLGGY
              190   

>>CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12               (236 aa)
 initn: 517 init1: 350 opt: 423  Z-score: 337.2  bits: 69.5 E(32554): 1.8e-12
Smith-Waterman score: 472; 52.0% identity (68.0% similar) in 175 aa overlap (23-190:88-236)

                       10        20        30        40            
pF1KE1         MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGG----
                                     :.: .::::.::.::       .: :    
CCDS31 QQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRR----LNFSGFGYSLP
        60        70        80        90       100           110   

          50        60        70        80        90       100     
pF1KE1 ---AAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRL
           ::::::::::::::::::::: .::.:::.:.:.::.:::::::::::::::::.:
CCDS31 QQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQL
           120       130       140       150       160       170   

         110       120       130       140       150       160     
pF1KE1 LAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY
       : :::::  :. .:.    . :.             ::. ...      .:  ::: :.:
CCDS31 LDEHDAVSAAFQAGV----LSPTI------------SPNYSNDL-----NSMAGSPVSSY
           180           190                   200            210  

         170       180       190   
pF1KE1 SSDDSGCEGALSPAERELLDFSSWLGGY
       :::. :    ::: :.:::::..:.   
CCDS31 SSDE-GSYDPLSPEEQELLDFTNWF   
             220       230         




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:16:28 2016 done: Sun Nov  6 15:16:29 2016
 Total Scan time:  2.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]