Result of FASTA (omim) for
pFN21AE1676
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1676, 190 aa
1>>>pF1KE1676 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3614+/-0.000328; mu= 12.8347+/- 0.020
mean_var=67.3616+/-12.951, 0's: 0 Z-trim(115.9): 19 B-trim: 52 in 1/56
Lambda= 0.156267
statistics sampled from 26583 (26600) to 26583 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.312), width: 16
Scan time: 5.910
The best scores are: opt bits E(85289)
NP_689729 (OMIM: 607238) COMM domain-containing pr ( 190) 1232 286.2 2.2e-77
XP_011530860 (OMIM: 607238) PREDICTED: COMM domain ( 160) 1013 236.8 1.4e-62
XP_011530861 (OMIM: 607238) PREDICTED: COMM domain ( 131) 832 195.9 2.3e-50
NP_001308711 (OMIM: 607238) COMM domain-containing ( 124) 799 188.4 3.8e-48
NP_001308710 (OMIM: 607238) COMM domain-containing ( 124) 799 188.4 3.8e-48
XP_016858901 (OMIM: 607238) PREDICTED: COMM domain ( 124) 799 188.4 3.8e-48
>>NP_689729 (OMIM: 607238) COMM domain-containing protei (190 aa)
initn: 1232 init1: 1232 opt: 1232 Z-score: 1510.3 bits: 286.2 E(85289): 2.2e-77
Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KE1 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
130 140 150 160 170 180
190
pF1KE1 SISTLISQPN
::::::::::
NP_689 SISTLISQPN
190
>>XP_011530860 (OMIM: 607238) PREDICTED: COMM domain-con (160 aa)
initn: 1013 init1: 1013 opt: 1013 Z-score: 1244.5 bits: 236.8 E(85289): 1.4e-62
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE1 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
::::::::::::::::::::::::::::::::::
XP_011 GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQPAVSKK
130 140 150 160
190
pF1KE1 SISTLISQPN
>>XP_011530861 (OMIM: 607238) PREDICTED: COMM domain-con (131 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1025.3 bits: 195.9 E(85289): 2.3e-50
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 130 aa overlap (61-190:2-131)
40 50 60 70 80 90
pF1KE1 TEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQ
::::::::::::::::::::::::::::::
XP_011 MSIASADMDFNQLEAFLTAQTKKQGGITSDQ
10 20 30
100 110 120 130 140 150
pF1KE1 AAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELG
40 50 60 70 80 90
160 170 180 190
pF1KE1 KYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
::::::::::::::::::::::::::::::::::::::::
XP_011 KYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
100 110 120 130
>>NP_001308711 (OMIM: 607238) COMM domain-containing pro (124 aa)
initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48
Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124)
40 50 60 70 80 90
pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK
::::::::::::::::::::::::::::::
NP_001 MDFNQLEAFLTAQTKKQGGITSDQAAVISK
10 20 30
100 110 120 130 140 150
pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
40 50 60 70 80 90
160 170 180 190
pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
::::::::::::::::::::::::::::::::::
NP_001 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
100 110 120
>>NP_001308710 (OMIM: 607238) COMM domain-containing pro (124 aa)
initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48
Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124)
40 50 60 70 80 90
pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK
::::::::::::::::::::::::::::::
NP_001 MDFNQLEAFLTAQTKKQGGITSDQAAVISK
10 20 30
100 110 120 130 140 150
pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
40 50 60 70 80 90
160 170 180 190
pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
::::::::::::::::::::::::::::::::::
NP_001 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
100 110 120
>>XP_016858901 (OMIM: 607238) PREDICTED: COMM domain-con (124 aa)
initn: 799 init1: 799 opt: 799 Z-score: 985.5 bits: 188.4 E(85289): 3.8e-48
Smith-Waterman score: 799; 100.0% identity (100.0% similar) in 124 aa overlap (67-190:1-124)
40 50 60 70 80 90
pF1KE1 SQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK
::::::::::::::::::::::::::::::
XP_016 MDFNQLEAFLTAQTKKQGGITSDQAAVISK
10 20 30
100 110 120 130 140 150
pF1KE1 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQES
40 50 60 70 80 90
160 170 180 190
pF1KE1 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
::::::::::::::::::::::::::::::::::
XP_016 EFLCLEFDEVKVNQILKTLSEVEESISTLISQPN
100 110 120
190 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:27:35 2016 done: Sun Nov 6 18:27:36 2016
Total Scan time: 5.910 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]