Result of FASTA (ccds) for
pFN21AE1671
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1671, 189 aa
1>>>pF1KE1671 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9286+/-0.000867; mu= 14.8944+/- 0.052
mean_var=61.7908+/-12.270, 0's: 0 Z-trim(105.8): 27 B-trim: 0 in 0/51
Lambda= 0.163159
statistics sampled from 8601 (8621) to 8601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.265), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1255 303.7 4.4e-83
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1100 267.2 4.2e-72
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1091 265.1 1.8e-71
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1074 261.1 2.9e-70
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1069 259.9 6.7e-70
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1068 259.7 7.8e-70
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1064 258.7 1.5e-69
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1058 257.3 4e-69
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1058 257.3 4e-69
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1041 253.3 6.4e-68
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1039 252.9 8.9e-68
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1022 248.9 1.4e-66
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 1002 244.1 3.7e-65
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 715 176.6 8.3e-45
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 357 92.3 2e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 346 89.7 1.1e-18
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1255 init1: 1255 opt: 1255 Z-score: 1605.1 bits: 303.7 E(32554): 4.4e-83
Smith-Waterman score: 1255; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1100 init1: 1100 opt: 1100 Z-score: 1407.9 bits: 267.2 E(32554): 4.2e-72
Smith-Waterman score: 1100; 86.8% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...:::::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::...::.:: ::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..::::::.::::::::::.:.::::::::::::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE1 LQERLRRKE
.::::::::
CCDS64 FQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1091 init1: 1091 opt: 1091 Z-score: 1396.5 bits: 265.1 E(32554): 1.8e-71
Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
:::::.:.::::::.::: :::::.: :::::.::::::.:::: ::::::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
:::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.:
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS65 LQKRLRRKD
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1074 init1: 1074 opt: 1074 Z-score: 1374.8 bits: 261.1 E(32554): 2.9e-70
Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
:::::.::::::::.::: ::: :::::::::..:::.:..::: ::: ::::::::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
::::::::::::::.:::::::.::::::::::::::..::: ::::.::::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1069 init1: 1069 opt: 1069 Z-score: 1368.4 bits: 259.9 E(32554): 6.7e-70
Smith-Waterman score: 1069; 84.7% identity (94.2% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF
:: ::.::::::::.::: ::::::::.::::.::::::..:::.:::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL
::::::::::::::: :::::::.::: ::::.::::::.::: ::::: ::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA
:::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE1 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
190
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1083 init1: 1068 opt: 1068 Z-score: 1367.2 bits: 259.7 E(32554): 7.8e-70
Smith-Waterman score: 1068; 83.6% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...::::::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
::.:::::.::::::::::::::::::::::::.::::.:...::.:: :::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.:
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1064 init1: 1064 opt: 1064 Z-score: 1362.1 bits: 258.7 E(32554): 1.5e-69
Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
:: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
:::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.:
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1073 init1: 1058 opt: 1058 Z-score: 1354.5 bits: 257.3 E(32554): 4e-69
Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...:::::::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
.::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.:
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::. ::::.
CCDS65 LQKILRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1073 init1: 1058 opt: 1058 Z-score: 1354.5 bits: 257.3 E(32554): 4e-69
Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:....:::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
.::::::::::::::::::::::::::::::::.::::.:...::.:: :::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.:
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 1039 init1: 683 opt: 1041 Z-score: 1332.9 bits: 253.3 E(32554): 6.4e-68
Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: :::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
:::::: :::::::..: :::::::: :::::::::::.:::::::::::::::::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.:
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KE1 LQERLRRKE
::: :: ::
CCDS65 LQESLRSKE
180
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:34:19 2016 done: Tue Nov 8 07:34:20 2016
Total Scan time: 1.850 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]