FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1669, 188 aa
  1>>>pF1KE1669 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3291+/-0.000303; mu= 14.3516+/- 0.019
 mean_var=119.5009+/-22.887, 0's: 0 Z-trim(120.1): 103  B-trim: 147 in 1/48
 Lambda= 0.117324
 statistics sampled from 34867 (35018) to 34867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.411), width:  16
 Scan time:  5.420

The best scores are:                                      opt bits E(85289)
NP_003203 (OMIM: 187395) teratocarcinoma-derived g ( 188) 1382 244.0 1.1e-64
NP_001167607 (OMIM: 187395) teratocarcinoma-derive ( 172) 1266 224.3 8.2e-59
NP_115934 (OMIM: 217095,605194,605376,613853) cryp ( 223)  319 64.2 1.7e-10
XP_011517019 (OMIM: 109730,190198,616028) PREDICTE (2314)  182 42.2  0.0072
NP_060087 (OMIM: 109730,190198,616028) neurogenic  (2555)  182 42.3  0.0076


>>NP_003203 (OMIM: 187395) teratocarcinoma-derived growt  (188 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1282.5  bits: 244.0 E(85289): 1.1e-64
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
              130       140       150       160       170       180

               
pF1KE1 CLSIQSYY
       ::::::::
NP_003 CLSIQSYY
               

>>NP_001167607 (OMIM: 187395) teratocarcinoma-derived gr  (172 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1176.8  bits: 224.3 E(85289): 8.2e-59
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 172 aa overlap (17-188:1-172)

               10        20        30        40        50        60
pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001                 MAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
                               10        20        30        40    

               70        80        90       100       110       120
pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
          110       120       130       140       150       160    

               
pF1KE1 CLSIQSYY
       ::::::::
NP_001 CLSIQSYY
          170  

>>NP_115934 (OMIM: 217095,605194,605376,613853) cryptic   (223 aa)
 initn: 336 init1: 316 opt: 319  Z-score: 309.3  bits: 64.2 E(85289): 1.7e-10
Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (52-181:68-184)

              30        40        50        60        70        80 
pF1KE1 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT
                                     :  :::   : :  :.   : .   .    
NP_115 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR----
        40        50        60        70            80             

              90       100       110       120       130       140 
pF1KE1 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF
       :: :::::.:::::.::  : :: :::: :. .::.. : .:  . : ::.:  : :.:.
NP_115 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL
      90       100       110       120       130       140         

             150       160       170       180                     
pF1KE1 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY             
       :      ::     . ..::.. . : .. . ...:.  :                    
NP_115 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP
     150           160        170       180       190       200    

NP_115 SVLQRERRPCGRPGLGHRL
          210       220   

>>XP_011517019 (OMIM: 109730,190198,616028) PREDICTED: n  (2314 aa)
 initn: 102 init1:  93 opt: 182  Z-score: 172.5  bits: 42.2 E(85289): 0.0072
Smith-Waterman score: 182; 37.9% identity (60.9% similar) in 87 aa overlap (74-153:742-819)

            50        60        70        80        90          100
pF1KE1 LAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLG--SF-CACPPS
                                     .. . ... :.:::::. :  :: : :::.
XP_011 PCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPG
             720       730       740       750       760       770 

              110         120       130       140         150      
pF1KE1 FYGRNCEHDVRKENCGSVP--HDTWLPKKCSLCKCWHGQLRCF-PQAFL-PGCDGLVMDE
       : :  :.:::  ..: : :  :        . :.   :. ::  ::..  :.:..::   
XP_011 FTGSYCQHDV--NECDSQPCLHG-------GTCQDGCGSYRCTCPQGYTGPNCQNLVHWC
             780         790              800       810       820  

        160       170       180                                    
pF1KE1 HLVASRTPELPPSARTTTFMLVGICLSIQSYY                            
                                                                   
XP_011 DSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCV
            830       840       850       860       870       880  

>>NP_060087 (OMIM: 109730,190198,616028) neurogenic locu  (2555 aa)
 initn: 119 init1:  93 opt: 182  Z-score: 172.1  bits: 42.3 E(85289): 0.0076
Smith-Waterman score: 182; 37.9% identity (60.9% similar) in 87 aa overlap (74-153:983-1060)

            50        60        70        80        90          100
pF1KE1 LAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLG--SF-CACPPS
                                     .. . ... :.:::::. :  :: : :::.
NP_060 PCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPG
            960       970       980       990      1000      1010  

              110         120       130       140         150      
pF1KE1 FYGRNCEHDVRKENCGSVP--HDTWLPKKCSLCKCWHGQLRCF-PQAFL-PGCDGLVMDE
       : :  :.:::  ..: : :  :        . :.   :. ::  ::..  :.:..::   
NP_060 FTGSYCQHDV--NECDSQPCLHG-------GTCQDGCGSYRCTCPQGYTGPNCQNLVHWC
           1020        1030             1040      1050      1060   

        160       170       180                                    
pF1KE1 HLVASRTPELPPSARTTTFMLVGICLSIQSYY                            
                                                                   
NP_060 DSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCV
          1070      1080      1090      1100      1110      1120   




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:50:41 2016 done: Sun Nov  6 17:50:42 2016
 Total Scan time:  5.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]