FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1669, 188 aa
  1>>>pF1KE1669 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2410+/-0.000714; mu= 14.7134+/- 0.043
 mean_var=106.6168+/-19.995, 0's: 0 Z-trim(113.1): 69  B-trim: 15 in 1/49
 Lambda= 0.124211
 statistics sampled from 13716 (13791) to 13716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3           ( 188) 1382 257.3 4.1e-69
CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3          ( 172) 1266 236.4   7e-63
CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2           ( 223)  319 66.9   1e-11
CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2        ( 223)  317 66.5 1.3e-11


>>CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3                (188 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1354.3  bits: 257.3 E(32554): 4.1e-69
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
              130       140       150       160       170       180

               
pF1KE1 CLSIQSYY
       ::::::::
CCDS27 CLSIQSYY
               

>>CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3               (172 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1242.4  bits: 236.4 E(32554): 7e-63
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 172 aa overlap (17-188:1-172)

               10        20        30        40        50        60
pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS54                 MAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR
                               10        20        30        40    

               70        80        90       100       110       120
pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI
          110       120       130       140       150       160    

               
pF1KE1 CLSIQSYY
       ::::::::
CCDS54 CLSIQSYY
          170  

>>CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2                (223 aa)
 initn: 336 init1: 316 opt: 319  Z-score: 323.9  bits: 66.9 E(32554): 1e-11
Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (52-181:68-184)

              30        40        50        60        70        80 
pF1KE1 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT
                                     :  :::   : :  :.   : .   .    
CCDS21 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR----
        40        50        60        70            80             

              90       100       110       120       130       140 
pF1KE1 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF
       :: :::::.:::::.::  : :: :::: :. .::.. : .:  . : ::.:  : :.:.
CCDS21 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL
      90       100       110       120       130       140         

             150       160       170       180                     
pF1KE1 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY             
       :      ::     . ..::.. . : .. . ...:.  :                    
CCDS21 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP
     150           160        170       180       190       200    

CCDS21 SVLQRERRPCGRPGLGHRL
          210       220   

>>CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2             (223 aa)
 initn: 336 init1: 316 opt: 317  Z-score: 322.0  bits: 66.5 E(32554): 1.3e-11
Smith-Waterman score: 317; 41.0% identity (65.0% similar) in 100 aa overlap (82-181:90-184)

              60        70        80        90       100       110 
pF1KE1 WPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVR
                                     :: :::::.:::::.::  : :: :::: :
CCDS33 EVTGSAEGWGPEEPLPYSWAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQR
      60        70        80        90       100       110         

             120       130       140       150       160       170 
pF1KE1 KENCGSVPHDTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSAR
       . .::.. : .:  . : ::.:  : :.:.:      ::     . ..::.. . : .. 
CCDS33 RSECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCD----PKDFLASHA-HGPSAGG
     120       130       140       150           160        170    

             180                                        
pF1KE1 TTTFMLVGICLSIQSYY                                
       . ...:.  :                                       
CCDS33 APSLLLLLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL
          180       190       200       210       220   




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:50:40 2016 done: Sun Nov  6 17:50:41 2016
 Total Scan time:  2.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]