Result of FASTA (ccds) for
pFN21AE1668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1668, 188 aa
1>>>pF1KE1668 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5506+/-0.000605; mu= 12.3283+/- 0.036
mean_var=73.9097+/-14.452, 0's: 0 Z-trim(112.4): 5 B-trim: 0 in 0/52
Lambda= 0.149184
statistics sampled from 13121 (13126) to 13121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.403), width: 16
Scan time: 2.160
The best scores are: opt bits E(32554)
CCDS32377.1 IL32 gene_id:9235|Hs108|chr16 ( 188) 1307 289.6 7.4e-79
CCDS76811.1 IL32 gene_id:9235|Hs108|chr16 ( 234) 1183 263.0 9.6e-71
CCDS45394.1 IL32 gene_id:9235|Hs108|chr16 ( 168) 1046 233.4 5.5e-62
CCDS32379.1 IL32 gene_id:9235|Hs108|chr16 ( 179) 999 223.3 6.4e-59
CCDS32378.1 IL32 gene_id:9235|Hs108|chr16 ( 131) 732 165.8 9.8e-42
>>CCDS32377.1 IL32 gene_id:9235|Hs108|chr16 (188 aa)
initn: 1307 init1: 1307 opt: 1307 Z-score: 1529.2 bits: 289.6 E(32554): 7.4e-79
Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KE1 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
130 140 150 160 170 180
pF1KE1 CSEPQSSK
::::::::
CCDS32 CSEPQSSK
>>CCDS76811.1 IL32 gene_id:9235|Hs108|chr16 (234 aa)
initn: 1293 init1: 1183 opt: 1183 Z-score: 1383.6 bits: 263.0 E(32554): 9.6e-71
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 170 aa overlap (19-188:65-234)
10 20 30 40
pF1KE1 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELED
::::::::::::::::::::::::::::::
CCDS76 ACDTEDTVGHLGPWRDKDPALWCQLCLSSQHQAIERFYDKMQNAESGRGQVMSSLAELED
40 50 60 70 80 90
50 60 70 80 90 100
pF1KE1 DFKEGYLETVAAYYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DFKEGYLETVAAYYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKV
100 110 120 130 140 150
110 120 130 140 150 160
pF1KE1 MRWFQAMLQRLQTWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MRWFQAMLQRLQTWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGA
160 170 180 190 200 210
170 180
pF1KE1 PRGDKEELTPQKCSEPQSSK
::::::::::::::::::::
CCDS76 PRGDKEELTPQKCSEPQSSK
220 230
>>CCDS45394.1 IL32 gene_id:9235|Hs108|chr16 (168 aa)
initn: 1156 init1: 1046 opt: 1046 Z-score: 1226.4 bits: 233.4 E(32554): 5.5e-62
Smith-Waterman score: 1120; 89.4% identity (89.4% similar) in 188 aa overlap (1-188:1-168)
10 20 30 40 50 60
pF1KE1 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
:::::::::::::::::: ::::::::::::::::::::::
CCDS45 MCFPKVLSDDMKKLKARM--------------------VMSSLAELEDDFKEGYLETVAA
10 20 30 40
70 80 90 100 110 120
pF1KE1 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
110 120 130 140 150 160
pF1KE1 CSEPQSSK
::::::::
CCDS45 CSEPQSSK
>>CCDS32379.1 IL32 gene_id:9235|Hs108|chr16 (179 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1171.3 bits: 223.3 E(32554): 6.4e-59
Smith-Waterman score: 1230; 95.2% identity (95.2% similar) in 188 aa overlap (1-188:1-179)
10 20 30 40 50 60
pF1KE1 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
:::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS32 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQ---------DDFKEGYLETVAA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
120 130 140 150 160 170
pF1KE1 CSEPQSSK
::::::::
CCDS32 CSEPQSSK
>>CCDS32378.1 IL32 gene_id:9235|Hs108|chr16 (131 aa)
initn: 732 init1: 732 opt: 732 Z-score: 862.7 bits: 165.8 E(32554): 9.8e-42
Smith-Waterman score: 775; 69.7% identity (69.7% similar) in 188 aa overlap (1-188:1-131)
10 20 30 40 50 60
pF1KE1 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCFPKVLSDDMKKLKARMHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYLETVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDKVMRWFQAMLQRLQ
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YYEEQHPELTPLLEKERDGLRCRGNRSPVPDVEDPATEEPGESFCDK-------------
70 80 90 100
130 140 150 160 170 180
pF1KE1 TWWHGVLAWVKEKVVALVHAVQALWKQFQSFCCSLSELFMSSFQSYGAPRGDKEELTPQK
::::::::::::::::
CCDS32 --------------------------------------------SYGAPRGDKEELTPQK
110 120
pF1KE1 CSEPQSSK
::::::::
CCDS32 CSEPQSSK
130
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:20:37 2016 done: Sun Nov 6 12:20:37 2016
Total Scan time: 2.160 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]