FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1666, 185 aa
  1>>>pF1KE1666 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0780+/-0.000371; mu= 13.9162+/- 0.023
 mean_var=60.0205+/-11.794, 0's: 0 Z-trim(113.8): 20  B-trim: 0 in 0/48
 Lambda= 0.165548
 statistics sampled from 23257 (23274) to 23257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.273), width:  16
 Scan time:  5.740

The best scores are:                                      opt bits E(85289)
NP_006414 (OMIM: 604925) prenylated Rab acceptor p ( 185) 1230 301.9 3.9e-82
NP_006398 (OMIM: 605709) PRA1 family protein 3 [Ho ( 188)  135 40.4  0.0021
NP_009144 (OMIM: 300840) PRA1 family protein 2 [Ho ( 178)  134 40.1  0.0024


>>NP_006414 (OMIM: 604925) prenylated Rab acceptor prote  (185 aa)
 initn: 1230 init1: 1230 opt: 1230  Z-score: 1595.6  bits: 301.9 E(85289): 3.9e-82
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KE1 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL
              130       140       150       160       170       180

            
pF1KE1 QMEPV
       :::::
NP_006 QMEPV
            

>>NP_006398 (OMIM: 605709) PRA1 family protein 3 [Homo s  (188 aa)
 initn: 123 init1:  78 opt: 135  Z-score: 182.1  bits: 40.4 E(85289): 0.0021
Smith-Waterman score: 135; 23.7% identity (58.6% similar) in 152 aa overlap (40-185:6-155)

      10        20        30        40        50           60      
pF1KE1 DAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVD-QQRFSRP--RNLGELCQR
                                     : .: :. :   ..::.::  :....  .:
NP_006                          MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNR
                                        10        20        30     

         70        80        90       100       110       120      
pF1KE1 LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREV
       .: :. :::.::. :   .:      ::. ..  ..     .  .. . ..: ::  :..
NP_006 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVL--RRM
          40        50        60        70        80        90     

        130       140        150         160       170       180   
pF1KE1 SPAHQYALAGGISFP-FFWLAGAGSAVFWVLGAT--LVVIGSHAAFHQIEAVDGEELQME
       .  .  ...  . .  .: ..  :... .:.: :  :...  ::...  .  .  : .::
NP_006 KKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME
           100       110       120       130       140       150   

                                          
pF1KE1 PV                                 
        .                                 
NP_006 GIGLKRTPMGIVLDALEQQEEGINRLTDYISKVKE
           160       170       180        

>>NP_009144 (OMIM: 300840) PRA1 family protein 2 [Homo s  (178 aa)
 initn: 132 init1:  56 opt: 134  Z-score: 181.2  bits: 40.1 E(85289): 0.0024
Smith-Waterman score: 134; 27.9% identity (56.4% similar) in 140 aa overlap (36-169:3-140)

          10        20        30        40         50          60  
pF1KE1 DQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFV-DQQRFSRPR--NLGE
                                     : :   .:  . ::  . :.. :   .  .
NP_009                             MSEVRLPPLRALDDFVLGSARLAAPDPCDPQR
                                           10        20        30  

             70        80         90         100       110         
pF1KE1 LCQRLVRNVEYYQSNYVFVF-LGLILYCVVTSPM--LLVALAVFFGACYILYLRTLESKL
        :.:.. :. :::.::.. : .:: :   :  :.  :: ::.:   :  .:   .     
NP_009 WCHRVINNLLYYQTNYLLCFGIGLALAGYVR-PLHTLLSALVVAV-ALGVLVWAAETRAA
             40        50        60         70         80        90

     120       130       140       150       160       170         
pF1KE1 VLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEE
       :   :.  ::   : . ....  .:.::.. . .. ... ...:  ::..          
NP_009 VRRCRRSHPAACLAAVLAVGLLVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIE
              100       110       120       130       140       150

     180                           
pF1KE1 LQMEPV                      
                                   
NP_009 NKIESIGLKRTPMGLLLEALGQEQEAGS
              160       170        




185 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:21:49 2016 done: Sun Nov  6 13:21:50 2016
 Total Scan time:  5.740 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]