FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1666, 185 aa
  1>>>pF1KE1666 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9897+/-0.000793; mu= 14.4583+/- 0.047
 mean_var=58.8568+/-11.928, 0's: 0 Z-trim(107.3): 15  B-trim: 50 in 1/48
 Lambda= 0.167177
 statistics sampled from 9478 (9488) to 9478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.291), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS12593.1 RABAC1 gene_id:10567|Hs108|chr19       ( 185) 1230 304.6 2.3e-83


>>CCDS12593.1 RABAC1 gene_id:10567|Hs108|chr19            (185 aa)
 initn: 1230 init1: 1230 opt: 1230  Z-score: 1610.1  bits: 304.6 E(32554): 2.3e-83
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KE1 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEEL
              130       140       150       160       170       180

            
pF1KE1 QMEPV
       :::::
CCDS12 QMEPV
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:21:48 2016 done: Sun Nov  6 13:21:48 2016
 Total Scan time:  1.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]