FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1665, 184 aa
  1>>>pF1KE1665 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0521+/-0.000873; mu= 16.0034+/- 0.053
 mean_var=130.2957+/-24.155, 0's: 0 Z-trim(111.4): 73  B-trim: 44 in 1/51
 Lambda= 0.112359
 statistics sampled from 12241 (12314) to 12241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.378), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS3963.1 ESM1 gene_id:11082|Hs108|chr5           ( 184) 1349 229.1 1.2e-60
CCDS47206.1 ESM1 gene_id:11082|Hs108|chr5          ( 134)  746 131.1 2.7e-31


>>CCDS3963.1 ESM1 gene_id:11082|Hs108|chr5                (184 aa)
 initn: 1349 init1: 1349 opt: 1349  Z-score: 1202.3  bits: 229.1 E(32554): 1.2e-60
Smith-Waterman score: 1349; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW
              130       140       150       160       170       180

           
pF1KE1 LNPR
       ::::
CCDS39 LNPR
           

>>CCDS47206.1 ESM1 gene_id:11082|Hs108|chr5               (134 aa)
 initn: 982 init1: 746 opt: 746  Z-score: 675.4  bits: 131.1 E(32554): 2.7e-31
Smith-Waterman score: 866; 72.8% identity (72.8% similar) in 184 aa overlap (1-184:1-134)

               10        20        30        40        50        60
pF1KE1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS47 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICK--------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE1 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW
                                     ::::::::::::::::::::::::::::::
CCDS47 ------------------------------EHDMASGDGNIVREEVVKENAAGSPVMRKW
                                            110       120       130

           
pF1KE1 LNPR
       ::::
CCDS47 LNPR
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:14:15 2016 done: Sun Nov  6 17:14:16 2016
 Total Scan time:  1.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]