FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1662, 180 aa
  1>>>pF1KE1662 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6626+/-0.000527; mu= 13.3892+/- 0.032
 mean_var=89.3283+/-17.358, 0's: 0 Z-trim(116.9): 9  B-trim: 0 in 0/52
 Lambda= 0.135700
 statistics sampled from 17618 (17625) to 17618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.541), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS4297.1 IL17B gene_id:27190|Hs108|chr5          ( 180) 1283 259.5   8e-70


>>CCDS4297.1 IL17B gene_id:27190|Hs108|chr5               (180 aa)
 initn: 1283 init1: 1283 opt: 1283  Z-score: 1367.0  bits: 259.5 E(32554): 8e-70
Smith-Waterman score: 1283; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE1 MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 CLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:04:55 2016 done: Sun Nov  6 17:04:55 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]