FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1661, 179 aa
  1>>>pF1KE1661 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9416+/-0.000362; mu= 14.7650+/- 0.022
 mean_var=61.7818+/-12.270, 0's: 0 Z-trim(113.0): 14  B-trim: 0 in 0/55
 Lambda= 0.163171
 statistics sampled from 22147 (22156) to 22147 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.26), width:  16
 Scan time:  5.630

The best scores are:                                      opt bits E(85289)
NP_065386 (OMIM: 605330) interleukin-22 precursor  ( 179) 1155 280.1 1.3e-75
NP_000563 (OMIM: 124092,180300,609423,614395) inte ( 178)  137 40.5  0.0018


>>NP_065386 (OMIM: 605330) interleukin-22 precursor [Hom  (179 aa)
 initn: 1155 init1: 1155 opt: 1155  Z-score: 1478.6  bits: 280.1 E(85289): 1.3e-75
Smith-Waterman score: 1155; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KE1 MAALQKSVSSFLMGTLATSCLLLLALLVQGGAAAPISSHCRLDKSNFQQPYITNRTFMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MAALQKSVSSFLMGTLATSCLLLLALLVQGGAAAPISSHCRLDKSNFQQPYITNRTFMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVP
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KE1 FLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI
              130       140       150       160       170         

>>NP_000563 (OMIM: 124092,180300,609423,614395) interleu  (178 aa)
 initn:  95 init1:  80 opt: 137  Z-score: 183.4  bits: 40.5 E(85289): 0.0018
Smith-Waterman score: 137; 25.5% identity (56.7% similar) in 157 aa overlap (20-170:9-164)

               10        20         30        40        50         
pF1KE1 MAALQKSVSSFLMGTLATSCLLLLA-LLVQGGAAAPISSHCRLDKSNFQQPYITNR-TFM
                          ::.::. . .. : ..   . :    .:. .     : .: 
NP_000            MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFPGNLPNMLRDLRDAFS
                          10        20        30        40         

       60        70        80        90       100       110        
pF1KE1 LAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEV
        .:      .. :  :. :.:..  .    :  ......: ::::. ::..  .: ..  
NP_000 RVKTFFQMKDQLDNLLLKESLLEDFKGYLGCQALSEMIQFYLEEVM-PQAENQDPDIKAH
      50        60        70        80        90        100        

      120           130       140       150       160       170    
pF1KE1 VPFLAR----LSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSL
       :  :..    :  ::  ::      . .. :...:.. .:: :.:  ::..:.:..    
NP_000 VNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYI
      110       120       130       140       150       160        

                 
pF1KE1 RNACI     
                 
NP_000 EAYMTMKIRN
      170        




179 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:46:29 2016 done: Sun Nov  6 14:46:30 2016
 Total Scan time:  5.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]