FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1660, 177 aa
  1>>>pF1KE1660 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4646+/-0.000577; mu= 13.2356+/- 0.035
 mean_var=81.4845+/-15.787, 0's: 0 Z-trim(114.4): 8  B-trim: 0 in 0/53
 Lambda= 0.142081
 statistics sampled from 14942 (14950) to 14942 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.459), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS9597.1 IL25 gene_id:64806|Hs108|chr14          ( 177) 1285 271.8 1.6e-73
CCDS45086.1 IL25 gene_id:64806|Hs108|chr14         ( 161) 1171 248.4 1.6e-66


>>CCDS9597.1 IL25 gene_id:64806|Hs108|chr14               (177 aa)
 initn: 1285 init1: 1285 opt: 1285  Z-score: 1433.6  bits: 271.8 E(32554): 1.6e-73
Smith-Waterman score: 1285; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KE1 MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KE1 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
              130       140       150       160       170       

>>CCDS45086.1 IL25 gene_id:64806|Hs108|chr14              (161 aa)
 initn: 1171 init1: 1171 opt: 1171  Z-score: 1307.9  bits: 248.4 E(32554): 1.6e-66
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 159 aa overlap (19-177:3-161)

               10        20        30        40        50        60
pF1KE1 MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS45                 MYQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP
                               10        20        30        40    

               70        80        90       100       110       120
pF1KE1 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT
           50        60        70        80        90       100    

              130       140       150       160       170       
pF1KE1 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
          110       120       130       140       150       160 




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:30:19 2016 done: Sun Nov  6 14:30:20 2016
 Total Scan time:  2.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]