FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1659, 176 aa
  1>>>pF1KE1659 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5194+/-0.000748; mu= 10.7341+/- 0.045
 mean_var=55.2443+/-10.748, 0's: 0 Z-trim(107.4): 13  B-trim: 3 in 1/50
 Lambda= 0.172556
 statistics sampled from 9531 (9541) to 9531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.293), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS1470.1 IL20 gene_id:50604|Hs108|chr1           ( 176) 1154 295.0 1.6e-80
CCDS1469.1 IL19 gene_id:29949|Hs108|chr1           ( 177)  457 121.5 2.7e-28
CCDS1468.1 IL19 gene_id:29949|Hs108|chr1           ( 215)  457 121.5 3.2e-28
CCDS1471.1 IL24 gene_id:11009|Hs108|chr1           ( 206)  292 80.4 7.2e-16
CCDS53465.1 IL24 gene_id:11009|Hs108|chr1          ( 207)  292 80.4 7.2e-16


>>CCDS1470.1 IL20 gene_id:50604|Hs108|chr1                (176 aa)
 initn: 1154 init1: 1154 opt: 1154  Z-score: 1559.3  bits: 295.0 E(32554): 1.6e-80
Smith-Waterman score: 1154; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE1 MKASSLAFSLLSAAFYLLWTPSTGLKTLNLGSCVIATNLQEIRNGFSEIRGSVQAKDGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MKASSLAFSLLSAAFYLLWTPSTGLKTLNLGSCVIATNLQEIRNGFSEIRGSVQAKDGNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQTPDHYTLRKISSLANSFLTIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQTPDHYTLRKISSLANSFLTIK
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE1 KDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKALGELDILLQWMEETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKALGELDILLQWMEETE
              130       140       150       160       170      

>>CCDS1469.1 IL19 gene_id:29949|Hs108|chr1                (177 aa)
 initn: 436 init1: 403 opt: 457  Z-score: 621.5  bits: 121.5 E(32554): 2.7e-28
Smith-Waterman score: 457; 40.2% identity (72.4% similar) in 174 aa overlap (1-174:1-169)

               10        20        30        40        50        60
pF1KE1 MKASSLAFSLLSAAFYLLWTPSTGLKTLNLGSCVIATNLQEIRNGFSEIRGSVQAKDGNI
       :: . ... ::.. . :  . . ::.      :.:.:....:...:.::. ..::::   
CCDS14 MKLQCVSLWLLGTILILCSVDNHGLRR-----CLISTDMHHIEESFQEIKRAIQAKDTFP
               10        20             30        40        50     

               70        80        90       100       110       120
pF1KE1 DIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQTPDHYTLRKISSLANSFLTIK
       .. ::   :.::  :: . ::. ..:: .:.:::::..: :.   ::::::.::::: ..
CCDS14 NVTILSTLETLQIIKPLDVCCVTKNLLAFYVDRVFKDHQEPNPKILRKISSIANSFLYMQ
          60        70        80        90       100       110     

              130       140       150       160       170          
pF1KE1 KDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKALGELDILLQWMEETE    
       : :: :. .  ::: .:: .    : .....:: .::..:.:::::..: :...      
CCDS14 KTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGELDVFLAWINKNHEVMF
         120       130       140       150       160       170     

CCDS14 SA
         

>>CCDS1468.1 IL19 gene_id:29949|Hs108|chr1                (215 aa)
 initn: 436 init1: 403 opt: 457  Z-score: 620.1  bits: 121.5 E(32554): 3.2e-28
Smith-Waterman score: 457; 40.2% identity (72.4% similar) in 174 aa overlap (1-174:39-207)

                                             10        20        30
pF1KE1                               MKASSLAFSLLSAAFYLLWTPSTGLKTLNL
                                     :: . ... ::.. . :  . . ::.    
CCDS14 HRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLGTILILCSVDNHGLRR---
       10        20        30        40        50        60        

               40        50        60        70        80        90
pF1KE1 GSCVIATNLQEIRNGFSEIRGSVQAKDGNIDIRILRRTESLQDTKPANRCCLLRHLLRLY
         :.:.:....:...:.::. ..::::   .. ::   :.::  :: . ::. ..:: .:
CCDS14 --CLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFY
            70        80        90       100       110       120   

              100       110       120       130       140       150
pF1KE1 LDRVFKNYQTPDHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFE
       .:::::..: :.   ::::::.::::: ..: :: :. .  ::: .:: .    : ....
CCDS14 VDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYD
           130       140       150       160       170       180   

              160       170            
pF1KE1 KLEPQAAVVKALGELDILLQWMEETE      
       .:: .::..:.:::::..: :...        
CCDS14 QLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
           190       200       210     

>>CCDS1471.1 IL24 gene_id:11009|Hs108|chr1                (206 aa)
 initn: 251 init1: 149 opt: 292  Z-score: 398.4  bits: 80.4 E(32554): 7.2e-16
Smith-Waterman score: 292; 33.1% identity (68.1% similar) in 163 aa overlap (17-174:41-202)

                             10        20          30         40   
pF1KE1               MKASSLAFSLLSAAFYLLWTPSTGLK--TLNLGSCVIATNL-QEIR
                                     :::.  .: .   ...: : .   . :.. 
CCDS14 WTLARPFCPPLLATASQMQMVVLPCLGFTLLLWSQVSGAQGQEFHFGPCQVKGVVPQKLW
               20        30        40        50        60        70

            50        60        70        80        90         100 
pF1KE1 NGFSEIRGSVQAKDGNIDIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQ--TP
       ..:  .. ..::.:.  . :.:.. : ::... :. : :.. ::..::  :::::.  : 
CCDS14 EAFWAVKDTMQAQDNITSARLLQQ-EVLQNVSDAESCYLVHTLLEFYLKTVFKNYHNRTV
               80        90        100       110       120         

             110       120       130       140       150       160 
pF1KE1 DHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKA
       .  ::...:.:::.:. : ..:.  . .      . : ...  .   :..:. .::..::
CCDS14 EVRTLKSFSTLANNFVLIVSQLQPSQENEMFSIRDSAHRRFLLFRRAFKQLDVEAALTKA
     130       140       150       160       170       180         

             170        
pF1KE1 LGELDILLQWMEETE  
       :::.:::: ::..    
CCDS14 LGEVDILLTWMQKFYKL
     190       200      

>>CCDS53465.1 IL24 gene_id:11009|Hs108|chr1               (207 aa)
 initn: 251 init1: 149 opt: 292  Z-score: 398.4  bits: 80.4 E(32554): 7.2e-16
Smith-Waterman score: 292; 33.1% identity (68.1% similar) in 163 aa overlap (17-174:42-203)

                             10        20          30         40   
pF1KE1               MKASSLAFSLLSAAFYLLWTPSTGLK--TLNLGSCVIATNL-QEIR
                                     :::.  .: .   ...: : .   . :.. 
CCDS53 TLASRPFCPPLLATASQMQMVVLPCLGFTLLLWSQVSGAQGQEFHFGPCQVKGVVPQKLW
              20        30        40        50        60        70 

            50        60        70        80        90         100 
pF1KE1 NGFSEIRGSVQAKDGNIDIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQ--TP
       ..:  .. ..::.:.  . :.:.. : ::... :. : :.. ::..::  :::::.  : 
CCDS53 EAFWAVKDTMQAQDNITSARLLQQ-EVLQNVSDAESCYLVHTLLEFYLKTVFKNYHNRTV
              80        90        100       110       120       130

             110       120       130       140       150       160 
pF1KE1 DHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKA
       .  ::...:.:::.:. : ..:.  . .      . : ...  .   :..:. .::..::
CCDS53 EVRTLKSFSTLANNFVLIVSQLQPSQENEMFSIRDSAHRRFLLFRRAFKQLDVEAALTKA
              140       150       160       170       180       190

             170        
pF1KE1 LGELDILLQWMEETE  
       :::.:::: ::..    
CCDS53 LGEVDILLTWMQKFYKL
              200       




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:41:35 2016 done: Sun Nov  6 18:41:35 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]