FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1657, 173 aa
  1>>>pF1KE1657 173 - 173 aa - 173 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1636+/-0.000352; mu= 13.2234+/- 0.022
 mean_var=61.3337+/-11.963, 0's: 0 Z-trim(113.9): 3  B-trim: 105 in 1/55
 Lambda= 0.163766
 statistics sampled from 23410 (23412) to 23410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.275), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(85289)
NP_061980 (OMIM: 606746) myeloid-derived growth fa ( 173) 1151 280.1 1.2e-75
XP_016882476 (OMIM: 606746) PREDICTED: myeloid-der ( 214)  693 171.9 5.5e-43


>>NP_061980 (OMIM: 606746) myeloid-derived growth factor  (173 aa)
 initn: 1151 init1: 1151 opt: 1151  Z-score: 1478.9  bits: 280.1 E(85289): 1.2e-75
Smith-Waterman score: 1151; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE1 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE1 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL
              130       140       150       160       170   

>>XP_016882476 (OMIM: 606746) PREDICTED: myeloid-derived  (214 aa)
 initn: 693 init1: 693 opt: 693  Z-score: 892.7  bits: 171.9 E(85289): 5.5e-43
Smith-Waterman score: 693; 98.0% identity (98.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KE1 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
       ::::::::::::::::::::::::::::::::::::::  :                   
XP_016 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQEASGGSLRGDRPHQPRETLQRP
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE1 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL       
                                                                   
XP_016 PCSLGEAHGRHRLSAGHCPAWTPECQLPRGHLGRCRSGAVGMVAGLTLSLNPPVQPPQKL
              130       140       150       160       170       180




173 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:31:56 2016 done: Sun Nov  6 13:31:57 2016
 Total Scan time:  5.290 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]