FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1655, 171 aa
  1>>>pF1KE1655 171 - 171 aa - 171 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6401+/-0.000375; mu= 10.7792+/- 0.023
 mean_var=66.3129+/-13.289, 0's: 0 Z-trim(112.4): 22  B-trim: 53 in 1/51
 Lambda= 0.157498
 statistics sampled from 21269 (21277) to 21269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.249), width:  16
 Scan time:  5.180

The best scores are:                                      opt bits E(85289)
NP_060872 (OMIM: 605679) interleukin-26 precursor  ( 171) 1111 261.1 6.4e-70
NP_000563 (OMIM: 124092,180300,609423,614395) inte ( 178)  189 51.6 7.7e-07


>>NP_060872 (OMIM: 605679) interleukin-26 precursor [Hom  (171 aa)
 initn: 1111 init1: 1111 opt: 1111  Z-score: 1376.3  bits: 261.1 E(85289): 6.4e-70
Smith-Waterman score: 1111; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KE1 MLVNFILRCGLLLVTLSLAIAKHKQSSFTKSCYPRGTLSQAVDALYIKAAWLKATIPEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLVNFILRCGLLLVTLSLAIAKHKQSSFTKSCYPRGTLSQAVDALYIKAAWLKATIPEDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 IKNIRLLKKKTKKQFMKNCQFQEQLLSFFMEDVFGQLQLQGCKKIRFVEDFHSLRQKLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IKNIRLLKKKTKKQFMKNCQFQEQLLSFFMEDVFGQLQLQGCKKIRFVEDFHSLRQKLSH
               70        80        90       100       110       120

              130       140       150       160       170 
pF1KE1 CISCASSAREMKSITRMKRIFYRIGNKGIYKAISELDILLSWIKKLLESSQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CISCASSAREMKSITRMKRIFYRIGNKGIYKAISELDILLSWIKKLLESSQ
              130       140       150       160       170 

>>NP_000563 (OMIM: 124092,180300,609423,614395) interleu  (178 aa)
 initn:  92 init1:  78 opt: 189  Z-score: 243.8  bits: 51.6 E(85289): 7.7e-07
Smith-Waterman score: 189; 26.0% identity (60.4% similar) in 169 aa overlap (6-167:6-172)

               10        20        30        40        50          
pF1KE1 MLVNFILRCGLLLVTLSLAIAKHKQSSFTKSCYPRGTLSQAVDALYIKAAWLKATIP-ED
            .: : .::. .  . ..  ::  . . .: :.: . .  :    . .:. .  .:
NP_000 MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFP-GNLPNMLRDLRDAFSRVKTFFQMKD
               10        20        30         40        50         

      60        70          80        90       100           110   
pF1KE1 RIKNIRLLKKKTKKQF--MKNCQFQEQLLSFFMEDVFGQLQLQGCKKIRFV----EDFHS
       .. :. :::..  ..:  . .::   ....:..:.:. : . :       :    :....
NP_000 QLDNL-LLKESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKT
      60         70        80        90       100       110        

           120       130       140       150       160       170   
pF1KE1 LRQKLSHCISCASSAREMKSITRMKRIFYRIGNKGIYKAISELDILLSWIKKLLESSQ  
       :: .: .:        . :.. ..:  : .. .::::::.::.::....:.  .      
NP_000 LRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIRN
      120       130       140       150       160       170        




171 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:30:17 2016 done: Sat Nov  5 22:30:17 2016
 Total Scan time:  5.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]