FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1653, 170 aa
  1>>>pF1KE1653 170 - 170 aa - 170 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4350+/-0.000296; mu= 12.2621+/- 0.018
 mean_var=68.5095+/-13.689, 0's: 0 Z-trim(118.0): 4  B-trim: 42 in 1/52
 Lambda= 0.154953
 statistics sampled from 30482 (30483) to 30482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.357), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(85289)
NP_004336 (OMIM: 600474) cathelicidin antimicrobia ( 173) 1133 261.4   5e-70


>>NP_004336 (OMIM: 600474) cathelicidin antimicrobial pe  (173 aa)
 initn: 1133 init1: 1133 opt: 1133  Z-score: 1378.2  bits: 261.4 E(85289): 5e-70
Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:4-173)

                  10        20        30        40        50       
pF1KE1    MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGTMKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA
               70        80        90       100       110       120

       120       130       140       150       160       170
pF1KE1 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES
              130       140       150       160       170   




170 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:49:23 2016 done: Sun Nov  6 17:49:23 2016
 Total Scan time:  5.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]