FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1653, 170 aa
  1>>>pF1KE1653 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1899+/-0.000632; mu= 13.9377+/- 0.038
 mean_var=66.5855+/-13.107, 0's: 0 Z-trim(111.4): 5  B-trim: 0 in 0/52
 Lambda= 0.157175
 statistics sampled from 12339 (12340) to 12339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.379), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS2762.2 CAMP gene_id:820|Hs108|chr3             ( 173) 1133 264.8 1.9e-71


>>CCDS2762.2 CAMP gene_id:820|Hs108|chr3                  (173 aa)
 initn: 1133 init1: 1133 opt: 1133  Z-score: 1396.2  bits: 264.8 E(32554): 1.9e-71
Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:4-173)

                  10        20        30        40        50       
pF1KE1    MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MGTMKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA
               70        80        90       100       110       120

       120       130       140       150       160       170
pF1KE1 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES
              130       140       150       160       170   




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:49:22 2016 done: Sun Nov  6 17:49:22 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]