FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1651, 145 aa
  1>>>pF1KE1651 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9332+/-0.000615; mu= 13.5755+/- 0.037
 mean_var=59.2330+/-11.843, 0's: 0 Z-trim(110.8): 20  B-trim: 0 in 0/49
 Lambda= 0.166645
 statistics sampled from 11898 (11918) to 11898 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS13165.2 CST7 gene_id:8530|Hs108|chr20          ( 145) 1002 248.4 1.2e-66
CCDS13158.1 CST3 gene_id:1471|Hs108|chr20          ( 146)  254 68.5 1.6e-12
CCDS13159.1 CST4 gene_id:1472|Hs108|chr20          ( 141)  235 64.0 3.7e-11
CCDS13160.1 CST1 gene_id:1469|Hs108|chr20          ( 141)  233 63.5 5.2e-11


>>CCDS13165.2 CST7 gene_id:8530|Hs108|chr20               (145 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 1310.2  bits: 248.4 E(32554): 1.2e-66
Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE1 MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQ
               70        80        90       100       110       120

              130       140     
pF1KE1 TLSCYSEVWVVPWLQHFEVPVLRCH
       :::::::::::::::::::::::::
CCDS13 TLSCYSEVWVVPWLQHFEVPVLRCH
              130       140     

>>CCDS13158.1 CST3 gene_id:1471|Hs108|chr20               (146 aa)
 initn: 270 init1: 176 opt: 254  Z-score: 338.3  bits: 68.5 E(32554): 1.6e-12
Smith-Waterman score: 254; 35.6% identity (63.0% similar) in 135 aa overlap (1-133:5-132)

                   10          20        30        40        50    
pF1KE1     MRAAGTLLAF--CCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAAR
           .::   :::.    :..: ..: ::         :.  : :   .... :: .:  
CCDS13 MAGPLRAPLLLLAILAVALAVSPAAGSSPGK-----PPRLVGG-PMDASVEEEGVRRALD
               10        20        30              40        50    

           60        70        80        90       100       110    
pF1KE1 YSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQT
       ..: ..:. .:::.  .  ...::  ::: :..:.:.::.::::: :.:   ::.: :. 
CCDS13 FAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQP-NLDNCPFHD
           60        70        80        90       100        110   

          120       130       140       
pF1KE1 NHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH  
       .  ::.   :  ....:::              
CCDS13 QPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA
           120       130       140      

>>CCDS13159.1 CST4 gene_id:1472|Hs108|chr20               (141 aa)
 initn: 218 init1: 145 opt: 235  Z-score: 313.8  bits: 64.0 E(32554): 3.7e-11
Smith-Waterman score: 235; 29.0% identity (59.4% similar) in 138 aa overlap (10-145:5-139)

               10          20        30        40        50        
pF1KE1 MRAAGTLLAFCCLVL--STTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVE
                .: :.:  .: .:   .. ...  .:. ::       ::  : .: .... 
CCDS13      MARPLCTLLLLMATLAGALASSSKEE--NRIIPGGIYDADLNDEWVQRALHFAIS
                    10        20          30        40        50   

       60        70        80        90       100       110        
pF1KE1 KFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTL
       ..:. :.: .  .  .. ::  :   :..:...::.::: : :.:   :: : :. .  :
CCDS13 EYNKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQP-NLDTCAFHEQPEL
            60        70        80        90        100       110  

      120       130       140       
pF1KE1 KQTLSCYSEVWVVPWLQHFEVPVLRCH  
       ..   :  :.. ::: ... .   ::.  
CCDS13 QKKQLCSFEIYEVPWEDRMSLVNSRCQEA
            120       130       140 

>>CCDS13160.1 CST1 gene_id:1469|Hs108|chr20               (141 aa)
 initn: 226 init1: 156 opt: 233  Z-score: 311.2  bits: 63.5 E(32554): 5.2e-11
Smith-Waterman score: 233; 32.7% identity (60.2% similar) in 113 aa overlap (33-145:28-139)

             10        20        30        40        50        60  
pF1KE1 AAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNN
                                     :. ::   .   ::  : .: .... ..:.
CCDS13    MAQYLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNK
                  10        20        30        40        50       

             70        80        90       100       110       120  
pF1KE1 CTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTL
        :.: .  .  :. ::  : : :..:...::.::: : :.:   :: : :. .  :..  
CCDS13 ATKDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQP-NLDTCAFHEQPELQKKQ
        60        70        80        90        100       110      

            130       140       
pF1KE1 SCYSEVWVVPWLQHFEVPVLRCH  
        :  :.. ::: ..  .   ::.  
CCDS13 LCSFEIYEVPWENRRSLVKSRCQES
        120       130       140 




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:06:20 2016 done: Sun Nov  6 13:06:20 2016
 Total Scan time:  1.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]