FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1648, 164 aa
  1>>>pF1KE1648 164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9895+/-0.00029; mu= 15.8943+/- 0.018
 mean_var=110.6753+/-21.475, 0's: 0 Z-trim(122.1): 38  B-trim: 922 in 2/50
 Lambda= 0.121913
 statistics sampled from 39722 (39770) to 39722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.466), width:  16
 Scan time:  5.830

The best scores are:                                      opt bits E(85289)
NP_000481 (OMIM: 125700,192340) vasopressin-neurop ( 164) 1210 222.2   3e-58
XP_011527569 (OMIM: 125700,192340) PREDICTED: vaso ( 164) 1210 222.2   3e-58
NP_000906 (OMIM: 167050) oxytocin-neurophysin 1 pr ( 125)  698 132.0 3.2e-31
XP_011527540 (OMIM: 167050) PREDICTED: oxytocin-ne ( 125)  698 132.0 3.2e-31


>>NP_000481 (OMIM: 125700,192340) vasopressin-neurophysi  (164 aa)
 initn: 1210 init1: 1210 opt: 1210  Z-score: 1166.8  bits: 222.2 E(85289): 3e-58
Smith-Waterman score: 1210; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
       ::::::::::::::::::::::::::::::::::::::::::::
NP_000 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    

>>XP_011527569 (OMIM: 125700,192340) PREDICTED: vasopres  (164 aa)
 initn: 1210 init1: 1210 opt: 1210  Z-score: 1166.8  bits: 222.2 E(85289): 3e-58
Smith-Waterman score: 1210; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
       ::::::::::::::::::::::::::::::::::::::::::::
XP_011 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    

>>NP_000906 (OMIM: 167050) oxytocin-neurophysin 1 prepro  (125 aa)
 initn: 770 init1: 679 opt: 698  Z-score: 681.4  bits: 132.0 E(85289): 3.2e-31
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
NP_000 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
NP_000 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
                                                   
NP_000 TFSQR                                       
                                                   

>>XP_011527540 (OMIM: 167050) PREDICTED: oxytocin-neurop  (125 aa)
 initn: 770 init1: 679 opt: 698  Z-score: 681.4  bits: 132.0 E(85289): 3.2e-31
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
XP_011 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
XP_011 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
                                                   
XP_011 TFSQR                                       
                                                   




164 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:10:09 2016 done: Mon Nov  7 22:10:09 2016
 Total Scan time:  5.830 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]