FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1648, 164 aa
  1>>>pF1KE1648 164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6697+/-0.000654; mu= 17.9265+/- 0.040
 mean_var=112.6617+/-21.041, 0's: 0 Z-trim(115.7): 28  B-trim: 22 in 1/50
 Lambda= 0.120833
 statistics sampled from 16225 (16247) to 16225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.499), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS13045.1 AVP gene_id:551|Hs108|chr20            ( 164) 1210 220.2 4.5e-58
CCDS13044.1 OXT gene_id:5020|Hs108|chr20           ( 125)  698 130.8 2.9e-31


>>CCDS13045.1 AVP gene_id:551|Hs108|chr20                 (164 aa)
 initn: 1210 init1: 1210 opt: 1210  Z-score: 1156.1  bits: 220.2 E(32554): 4.5e-58
Smith-Waterman score: 1210; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    

>>CCDS13044.1 OXT gene_id:5020|Hs108|chr20                (125 aa)
 initn: 770 init1: 679 opt: 698  Z-score: 674.9  bits: 130.8 E(32554): 2.9e-31
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE1 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
CCDS13 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
CCDS13 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
                                                   
CCDS13 TFSQR                                       
                                                   




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:10:08 2016 done: Mon Nov  7 22:10:08 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]