Result of FASTA (omim) for
pFN21AE1645
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1645, 160 aa
1>>>pF1KE1645 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7176+/-0.000371; mu= 14.5712+/- 0.023
mean_var=51.3254+/-10.523, 0's: 0 Z-trim(111.8): 32 B-trim: 80 in 1/49
Lambda= 0.179023
statistics sampled from 20483 (20510) to 20483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.24), width: 16
Scan time: 3.570
The best scores are: opt bits E(85289)
NP_056179 (OMIM: 605243) lymphocyte antigen 96 iso ( 160) 1083 287.3 7.1e-78
XP_011515810 (OMIM: 605243) PREDICTED: lymphocyte ( 138) 852 227.6 5.8e-60
XP_016868788 (OMIM: 605243) PREDICTED: lymphocyte ( 191) 852 227.7 7.6e-60
NP_001182726 (OMIM: 605243) lymphocyte antigen 96 ( 130) 615 166.4 1.5e-41
XP_016868789 (OMIM: 605243) PREDICTED: lymphocyte ( 161) 395 109.6 2.2e-24
NP_004262 (OMIM: 605241) lymphocyte antigen 86 pre ( 162) 142 44.3 0.0001
XP_016866994 (OMIM: 605241) PREDICTED: lymphocyte ( 189) 136 42.7 0.00035
>>NP_056179 (OMIM: 605243) lymphocyte antigen 96 isoform (160 aa)
initn: 1083 init1: 1083 opt: 1083 Z-score: 1519.0 bits: 287.3 E(85289): 7.1e-78
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
70 80 90 100 110 120
130 140 150 160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
::::::::::::::::::::::::::::::::::::::::
NP_056 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
130 140 150 160
>>XP_011515810 (OMIM: 605243) PREDICTED: lymphocyte anti (138 aa)
initn: 852 init1: 852 opt: 852 Z-score: 1197.6 bits: 227.6 E(85289): 5.8e-60
Smith-Waterman score: 852; 99.2% identity (99.2% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKRSKGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
70 80 90 100 110 120
130 140 150 160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
::::::::
XP_011 FKGIKFSKEEEVKTKRQK
130
>>XP_016868788 (OMIM: 605243) PREDICTED: lymphocyte anti (191 aa)
initn: 852 init1: 852 opt: 852 Z-score: 1195.4 bits: 227.7 E(85289): 7.6e-60
Smith-Waterman score: 852; 99.2% identity (99.2% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_016 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKRSKGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
70 80 90 100 110 120
130 140 150 160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
::::::::
XP_016 FKGIKFSKFWCNNRPAFLPDERQLTMEWFWPVYGECAAKVFLSSASSFDVRGPKTPPWDY
130 140 150 160 170 180
>>NP_001182726 (OMIM: 605243) lymphocyte antigen 96 isof (130 aa)
initn: 856 init1: 615 opt: 615 Z-score: 867.2 bits: 166.4 E(85289): 1.5e-41
Smith-Waterman score: 797; 80.6% identity (80.6% similar) in 160 aa overlap (1-160:1-130)
10 20 30 40 50 60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
:::::::::::::::::::::::::::::::::::::
NP_001 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCG----------------------
10 20 30
70 80 90 100 110 120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------RDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
40 50 60 70 80 90
130 140 150 160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
::::::::::::::::::::::::::::::::::::::::
NP_001 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
100 110 120 130
>>XP_016868789 (OMIM: 605243) PREDICTED: lymphocyte anti (161 aa)
initn: 636 init1: 395 opt: 395 Z-score: 558.7 bits: 109.6 E(85289): 2.2e-24
Smith-Waterman score: 577; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-98)
10 20 30 40 50 60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
:::::::::::::::::::::::::::::::::::::
XP_016 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCG----------------------
10 20 30
70 80 90 100 110 120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 --------RDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
40 50 60 70 80 90
130 140 150 160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
::::::::
XP_016 FKGIKFSKFWCNNRPAFLPDERQLTMEWFWPVYGECAAKVFLSSASSFDVRGPKTPPWDY
100 110 120 130 140 150
>>NP_004262 (OMIM: 605241) lymphocyte antigen 86 precurs (162 aa)
initn: 102 init1: 58 opt: 142 Z-score: 205.5 bits: 44.3 E(85289): 0.0001
Smith-Waterman score: 142; 24.8% identity (56.2% similar) in 137 aa overlap (5-136:8-143)
10 20 30 40 50
pF1KE1 MLPFLFFSTL-FSSIFTEAQKQYW----VCNSSDASISYTYCDKMQYPISINVNPCI
::. :: : : . . : ::..: . : :: .: ....:. :
NP_004 MKGFTATLFLWTLIFPSCSGGGGGKAWPTHVVCSDSGLEVLYQSCDPLQ-DFGFSVEKCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 ELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGET
. :. ... : :.:.:.:...: . . .. . . ::... .::: :::
NP_004 KQLKSNINIRFGIILREDIKELFLDLALMSQGSSVLNFSYPICEAALPKFSFCGRRKGEQ
60 70 80 90 100 110
120 130 140 150 160
pF1KE1 VNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
. . . . . .:.:. ..:
NP_004 IYYAGPVNNPEFTIPQGEYQVLLELYTEKRSTVACANATIMCS
120 130 140 150 160
>>XP_016866994 (OMIM: 605241) PREDICTED: lymphocyte anti (189 aa)
initn: 106 init1: 58 opt: 136 Z-score: 196.1 bits: 42.7 E(85289): 0.00035
Smith-Waterman score: 136; 25.3% identity (54.7% similar) in 150 aa overlap (5-149:8-150)
10 20 30 40 50
pF1KE1 MLPFLFFSTL-FSSIFTEAQKQYW----VCNSSDASISYTYCDKMQYPISINVNPCI
::. :: : : . . : ::..: . : :: .: ....:. :
XP_016 MKGFTATLFLWTLIFPSCSGGGGGKAWPTHVVCSDSGLEVLYQSCDPLQ-DFGFSVEKCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 ELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGET
. :. ... : :.:.:.:...: . . .. . . ::... .::: ::
XP_016 KQLKSNINIRFGIILREDIKELFLDLALMSQGSSVLNFSYPICEAALPKFSFCGRRKGGK
60 70 80 90 100 110
120 130 140 150 160
pF1KE1 VNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
.. .. : ... : . . :: . :: .::
XP_016 PSVLLT---AGRGLQRDKLELASEARTPRPE---LCLCPSPLDELILTYQHVLQKNNNKA
120 130 140 150 160 170
XP_016 HSIGLPYRAVVNIKMK
180
160 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:07:00 2016 done: Sun Nov 6 16:07:01 2016
Total Scan time: 3.570 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]