FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1641, 155 aa
  1>>>pF1KE1641 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3071+/-0.000511; mu= 12.8555+/- 0.031
 mean_var=67.3565+/-13.267, 0's: 0 Z-trim(114.9): 9  B-trim: 0 in 0/50
 Lambda= 0.156273
 statistics sampled from 15490 (15495) to 15490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.476), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS117.2 CORT gene_id:1325|Hs108|chr1             ( 105)  721 170.0 3.6e-43
CCDS72699.1 CORT gene_id:100526739|Hs108|chr1      ( 143)  516 123.8 3.8e-29
CCDS114.1 CORT gene_id:100526739|Hs108|chr1        ( 164)  516 123.9 4.3e-29


>>CCDS117.2 CORT gene_id:1325|Hs108|chr1                  (105 aa)
 initn: 721 init1: 721 opt: 721  Z-score: 888.5  bits: 170.0 E(32554): 3.6e-43
Smith-Waterman score: 721; 100.0% identity (100.0% similar) in 105 aa overlap (51-155:1-105)

               30        40        50        60        70        80
pF1KE1 ETQVPKTLISGLPGRKSSSRVGEKLQSAHKMPLSPGLLLLLLSGATATAALPLEGGPTGR
                                     ::::::::::::::::::::::::::::::
CCDS11                               MPLSPGLLLLLLSGATATAALPLEGGPTGR
                                             10        20        30

               90       100       110       120       130       140
pF1KE1 DSEHMQEAAGIRKSSLLTFLAWWFEWTSQASAGPLIGEEAREVARRQEGAPPQQSARRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSEHMQEAAGIRKSSLLTFLAWWFEWTSQASAGPLIGEEAREVARRQEGAPPQQSARRDR
               40        50        60        70        80        90

              150     
pF1KE1 MPCRNFFWKTFSSCK
       :::::::::::::::
CCDS11 MPCRNFFWKTFSSCK
              100     

>>CCDS72699.1 CORT gene_id:100526739|Hs108|chr1           (143 aa)
 initn: 516 init1: 516 opt: 516  Z-score: 636.8  bits: 123.8 E(32554): 3.8e-29
Smith-Waterman score: 516; 97.3% identity (98.7% similar) in 75 aa overlap (81-155:69-143)

               60        70        80        90       100       110
pF1KE1 MPLSPGLLLLLLSGATATAALPLEGGPTGRDSEHMQEAAGIRKSSLLTFLAWWFEWTSQA
                                     .: :::::::::::::::::::::::::::
CCDS72 NFAKDLEMFARHAKRTTINTEDVKLLARRSNSLHMQEAAGIRKSSLLTFLAWWFEWTSQA
       40        50        60        70        80        90        

              120       130       140       150     
pF1KE1 SAGPLIGEEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSCK
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SAGPLIGEEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSCK
      100       110       120       130       140   

>>CCDS114.1 CORT gene_id:100526739|Hs108|chr1             (164 aa)
 initn: 516 init1: 516 opt: 516  Z-score: 635.9  bits: 123.9 E(32554): 4.3e-29
Smith-Waterman score: 516; 97.3% identity (98.7% similar) in 75 aa overlap (81-155:90-164)

               60        70        80        90       100       110
pF1KE1 MPLSPGLLLLLLSGATATAALPLEGGPTGRDSEHMQEAAGIRKSSLLTFLAWWFEWTSQA
                                     .: :::::::::::::::::::::::::::
CCDS11 NFAKDLEMFARHAKRTTINTEDVKLLARRSNSLHMQEAAGIRKSSLLTFLAWWFEWTSQA
      60        70        80        90       100       110         

              120       130       140       150     
pF1KE1 SAGPLIGEEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSCK
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAGPLIGEEAREVARRQEGAPPQQSARRDRMPCRNFFWKTFSSCK
     120       130       140       150       160    




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:31:52 2016 done: Sun Nov  6 19:31:53 2016
 Total Scan time:  1.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]