FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1637, 152 aa
  1>>>pF1KE1637 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8809+/-0.00067; mu= 13.6565+/- 0.040
 mean_var=54.4403+/-10.849, 0's: 0 Z-trim(108.9): 7  B-trim: 0 in 0/51
 Lambda= 0.173826
 statistics sampled from 10545 (10549) to 10545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.324), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS6927.1 PTGES gene_id:9536|Hs108|chr9           ( 152) 1031 265.9 6.7e-72
CCDS8677.1 MGST1 gene_id:4257|Hs108|chr12          ( 155)  342 93.2   7e-20


>>CCDS6927.1 PTGES gene_id:9536|Hs108|chr9                (152 aa)
 initn: 1031 init1: 1031 opt: 1031  Z-score: 1404.4  bits: 265.9 E(32554): 6.7e-72
Smith-Waterman score: 1031; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE1 MPAHSLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPAHSLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGK
               70        80        90       100       110       120

              130       140       150  
pF1KE1 LRAPIRSVTYTLAQLPCASMALQILWEAARHL
       ::::::::::::::::::::::::::::::::
CCDS69 LRAPIRSVTYTLAQLPCASMALQILWEAARHL
              130       140       150  

>>CCDS8677.1 MGST1 gene_id:4257|Hs108|chr12               (155 aa)
 initn: 325 init1: 234 opt: 342  Z-score: 470.4  bits: 93.2 E(32554): 7e-20
Smith-Waterman score: 342; 39.9% identity (68.5% similar) in 143 aa overlap (7-145:7-149)

               10        20        30        40        50          
pF1KE1 MPAHSLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHG----GP
             ::.. .. ::   .:... ::....  :.  :: .:.:::::: .  :    . 
CCDS86 MVDLTQVMDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAK
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE1 QYCRSDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVA
       .: :.:  :::  ::: ::.:.: ::: .:..::. ::.: .: .:: .:. .:. ::.:
CCDS86 KYLRTDDRVERVRRAHLNDLENIIPFLGIGLLYSLSGPDPSTAILHFRLFVGARIYHTIA
               70        80        90       100       110       120

        120       130       140       150  
pF1KE1 YLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHL
       ::  :  : :.... ..     ::: ..:       
CCDS86 YLTPLPQPNRALSFFVGYGVTLSMAYRLLKSKLYL 
              130       140       150      




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:40:38 2016 done: Sun Nov  6 15:40:38 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]