FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1631, 147 aa
  1>>>pF1KE1631 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0495+/-0.000589; mu= 12.8587+/- 0.035
 mean_var=59.8947+/-11.881, 0's: 0 Z-trim(111.7): 15  B-trim: 81 in 1/51
 Lambda= 0.165722
 statistics sampled from 12589 (12604) to 12589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.387), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS9554.1 ANG gene_id:283|Hs108|chr14             ( 147) 1030 253.8 2.9e-68
CCDS9555.1 RNASE4 gene_id:6038|Hs108|chr14         ( 147)  343 89.5   8e-19
CCDS9559.1 RNASE1 gene_id:6035|Hs108|chr14         ( 156)  311 81.9 1.7e-16


>>CCDS9554.1 ANG gene_id:283|Hs108|chr14                  (147 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1339.1  bits: 253.8 E(32554): 2.9e-68
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KE1 MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA
               70        80        90       100       110       120

              130       140       
pF1KE1 TAGFRNVVVACENGLPVHLDQSIFRRP
       :::::::::::::::::::::::::::
CCDS95 TAGFRNVVVACENGLPVHLDQSIFRRP
              130       140       

>>CCDS9555.1 RNASE4 gene_id:6038|Hs108|chr14              (147 aa)
 initn: 270 init1: 250 opt: 343  Z-score: 451.4  bits: 89.5 E(32554): 8e-19
Smith-Waterman score: 343; 41.7% identity (67.6% similar) in 139 aa overlap (5-140:9-146)

                   10        20        30        40        50      
pF1KE1     MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRR
               : .:::. .:::::. :. .::.  : .:: ::   .  : .::::. .:.:
CCDS95 MALQRTHSLLLLLLLTLLGLGLVQPSYGQDGM-YQRFLRQHVHPEETGGSDRYCNLMMQR
               10        20        30         40        50         

         60         70        80        90       100       110     
pF1KE1 RGLT-SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPP
       : .:   :: .::::: .  .:..:: . : . .  ..   ..  .:: :.  :.:  : 
CCDS95 RKMTLYHCKRFNTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPN
      60        70        80        90       100       110         

         120       130         140       
pF1KE1 CQYRATAGFRNVVVACENG--LPVHLDQSIFRRP
       :.::: :. : ::.:::..  .:::.:       
CCDS95 CRYRAIASTRRVVIACEGNPQVPVHFDG      
     120       130       140             

>>CCDS9559.1 RNASE1 gene_id:6035|Hs108|chr14              (156 aa)
 initn: 259 init1: 131 opt: 311  Z-score: 409.7  bits: 81.9 E(32554): 1.7e-16
Smith-Waterman score: 311; 36.3% identity (69.2% similar) in 146 aa overlap (7-143:11-152)

                   10        20        30        40         50     
pF1KE1     MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQ-GRDDRYCESIMR
                 .::....: :: . :.:... ::  .:  ::.:.  . . .. ::...::
CCDS95 MALEKSLVRLLLLVLILLVLGWVQPSLGKE-SRAKKFQRQHMDSDSSPSSSSTYCNQMMR
               10        20        30         40        50         

          60         70        80             90       100         
pF1KE1 RRGLTSP-CKDINTFIHGNKRSIKAICEN-----KNGNPHRENLRISKSSFQVTTCKLHG
       ::..:.  :: .:::.:    ... .: .     :::.    :   :.::...: :.: .
CCDS95 RRNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQG---NCYKSNSSMHITDCRLTN
      60        70        80        90          100       110      

     110       120       130         140       
pF1KE1 GSPWPPCQYRATAGFRNVVVACENG--LPVHLDQSIFRRP
       :: .: : ::..   :...::::..  .:::.: :.    
CCDS95 GSRYPNCAYRTSPKERHIIVACEGSPYVPVHFDASVEDST
        120       130       140       150      




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:51:04 2016 done: Sun Nov  6 09:51:04 2016
 Total Scan time:  1.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]