Result of FASTA (omim) for
pFN21AE1630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1630, 147 aa
1>>>pF1KE1630 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6208+/-0.000279; mu= 15.6632+/- 0.017
mean_var=61.3161+/-12.527, 0's: 0 Z-trim(119.9): 134 B-trim: 623 in 1/51
Lambda= 0.163790
statistics sampled from 34345 (34516) to 34345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.405), width: 16
Scan time: 4.370
The best scores are: opt bits E(85289)
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 1039 252.9 1.4e-67
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 1016 247.5 5.9e-66
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 1012 246.5 1.1e-65
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 988 240.9 6.5e-64
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 983 239.7 1.3e-63
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 955 233.1 1.3e-61
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 835 204.6 3.7e-53
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 827 202.7 1.4e-52
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 827 202.7 1.4e-52
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 720 177.4 5.4e-45
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 700 172.7 1.4e-43
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 668 165.4 4.3e-41
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 668 165.4 4.3e-41
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 668 165.4 4.3e-41
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 668 165.4 4.3e-41
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 668 165.4 4.3e-41
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 663 164.1 9.3e-41
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 663 164.2 9.6e-41
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 663 164.2 9.6e-41
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 657 162.7 2.2e-40
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 581 144.7 5.9e-35
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 557 139.1 3.2e-33
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 543 135.7 2.9e-32
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 460 116.1 2.1e-26
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 440 111.4 5.7e-25
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 434 110.0 1.5e-24
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 432 109.6 2.6e-24
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 405 103.2 2.2e-22
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 399 101.7 4.7e-22
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 389 99.4 3.1e-21
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 383 97.9 6.9e-21
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 377 96.4 1.4e-20
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 374 95.9 3.7e-20
NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 360 92.4 2.4e-19
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 359 92.2 3.3e-19
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 355 91.3 6.5e-19
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 349 89.9 1.7e-18
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 89.9 1.7e-18
NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 89.9 1.7e-18
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 89.9 1.7e-18
NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 349 89.9 1.7e-18
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 347 89.5 2.7e-18
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 327 84.6 5.8e-17
NP_003960 (OMIM: 603173) NEDD8-conjugating enzyme ( 183) 327 84.7 7.1e-17
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 1039 init1: 1039 opt: 1039 Z-score: 1334.5 bits: 252.9 E(85289): 1.4e-67
Smith-Waterman score: 1039; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::::::::::::::::::
NP_003 PEIARIYKTDREKYNRIAREWTQKYAM
130 140
>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_003 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871619 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1305.1 bits: 247.5 E(85289): 5.9e-66
Smith-Waterman score: 1016; 97.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.:::::.:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 1012 init1: 1012 opt: 1012 Z-score: 1300.0 bits: 246.5 E(85289): 1.1e-65
Smith-Waterman score: 1012; 96.6% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::.::::.:::::.::::
NP_871 PEIARIYKTDRDKYNRLAREWTEKYAML
130 140
>>XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-conju (173 aa)
initn: 988 init1: 988 opt: 988 Z-score: 1268.4 bits: 240.9 E(85289): 6.5e-64
Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 139 aa overlap (9-147:35-173)
10 20 30
pF1KE1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIM
::::::::::::::::::::::::::::::
XP_016 AWPIDFLFPAAIGDWAEWTRLPFGNFLCAFELNDLARDPPAQCSAGPVGDDMFHWQATIM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 GPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALT
70 80 90 100 110 120
100 110 120 130 140
pF1KE1 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
130 140 150 160 170
147 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:57:58 2016 done: Sun Nov 6 10:57:58 2016
Total Scan time: 4.370 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]