FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1627, 142 aa
  1>>>pF1KE1627 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8142+/-0.000749; mu= 13.5548+/- 0.045
 mean_var=58.8084+/-11.499, 0's: 0 Z-trim(107.9): 18  B-trim: 0 in 0/51
 Lambda= 0.167246
 statistics sampled from 9877 (9892) to 9877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.304), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS13162.1 CST5 gene_id:1473|Hs108|chr20          ( 142)  947 236.3 4.8e-63
CCDS13161.1 CST2 gene_id:1470|Hs108|chr20          ( 141)  566 144.4 2.2e-35
CCDS13159.1 CST4 gene_id:1472|Hs108|chr20          ( 141)  556 142.0 1.2e-34
CCDS13160.1 CST1 gene_id:1469|Hs108|chr20          ( 141)  540 138.1 1.7e-33
CCDS13158.1 CST3 gene_id:1471|Hs108|chr20          ( 146)  499 128.2 1.7e-30


>>CCDS13162.1 CST5 gene_id:1473|Hs108|chr20               (142 aa)
 initn: 947 init1: 947 opt: 947  Z-score: 1245.4  bits: 236.3 E(32554): 4.8e-63
Smith-Waterman score: 947; 99.3% identity (99.3% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS13 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS
               70        80        90       100       110       120

              130       140  
pF1KE1 FQINEVPWEDKISILNYKCRKV
       ::::::::::::::::::::::
CCDS13 FQINEVPWEDKISILNYKCRKV
              130       140  

>>CCDS13161.1 CST2 gene_id:1470|Hs108|chr20               (141 aa)
 initn: 563 init1: 381 opt: 566  Z-score: 748.6  bits: 144.4 E(32554): 2.2e-35
Smith-Waterman score: 566; 56.7% identity (83.7% similar) in 141 aa overlap (1-141:1-140)

               10        20        30        40        50        60
pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN
       : ::. : ::::..  ::.: : . ..: . :::. .::::. ::::: :.::::::. .
CCDS13 MAWPLCTLLLLLATQAVALAWSPQEEDRIIEGGIYDADLNDERVQRALHFVISEYNKA-T
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS
       .:::: : :.:. : .::::::::.:... ::: :::::::::.: :..::.:.....::
CCDS13 EDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS
      60        70        80        90       100       110         

              130       140  
pF1KE1 FQINEVPWEDKISILNYKCRKV
       ::: ::::::..:..: .:.. 
CCDS13 FQIYEVPWEDRMSLVNSRCQEA
     120       130       140 

>>CCDS13159.1 CST4 gene_id:1472|Hs108|chr20               (141 aa)
 initn: 624 init1: 385 opt: 556  Z-score: 735.6  bits: 142.0 E(32554): 1.2e-34
Smith-Waterman score: 556; 56.0% identity (83.7% similar) in 141 aa overlap (1-141:1-140)

               10        20        30        40        50        60
pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN
       :  :. : :::...:  :.:.:.. ..: . :::. .::::. ::::: ::::::::. .
CCDS13 MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKA-T
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS
       .:::: :::::. : .:  :::::.:.:. ::: :::::::::.: :..::.:.....::
CCDS13 EDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS
      60        70        80        90       100       110         

              130       140  
pF1KE1 FQINEVPWEDKISILNYKCRKV
       :.: ::::::..:..: .:.. 
CCDS13 FEIYEVPWEDRMSLVNSRCQEA
     120       130       140 

>>CCDS13160.1 CST1 gene_id:1469|Hs108|chr20               (141 aa)
 initn: 557 init1: 373 opt: 540  Z-score: 714.7  bits: 138.1 E(32554): 1.7e-33
Smith-Waterman score: 540; 56.0% identity (82.3% similar) in 141 aa overlap (1-141:1-140)

               10        20        30        40        50        60
pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN
       :   . : ::::..: ::.: : . ..: . :::. .::::. ::::: ::::::::. .
CCDS13 MAQYLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKA-T
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS
       ::.:: :::.:. : :: ::::::.:.:. ::: :::::::::.: :..::.:.....::
CCDS13 KDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS
      60        70        80        90       100       110         

              130       140  
pF1KE1 FQINEVPWEDKISILNYKCRKV
       :.: :::::.. :... .:.. 
CCDS13 FEIYEVPWENRRSLVKSRCQES
     120       130       140 

>>CCDS13158.1 CST3 gene_id:1471|Hs108|chr20               (146 aa)
 initn: 493 init1: 334 opt: 499  Z-score: 661.0  bits: 128.2 E(32554): 1.7e-30
Smith-Waterman score: 499; 51.7% identity (79.3% similar) in 145 aa overlap (1-140:1-144)

               10        20             30        40        50     
pF1KE1 MMWPMHTPLLLLTALMVAVA-----GSASAQSRTLAGGIHATDLNDKSVQRALDFAISEY
       :  :...:::::. : ::.:     ::. ..   :.::   .......:.::::::..::
CCDS13 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE1 NKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKE
       ::. : : :.:: :::. : .:::.::::...:..:::::::.:::::::::.:::.::.
CCDS13 NKASN-DMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR
                70        80        90       100       110         

         120       130       140  
pF1KE1 EEFCSFQINEVPWEDKISILNYKCRKV
       . ::::::  :::.  ... .  :.  
CCDS13 KAFCSFQIYAVPWQGTMTLSKSTCQDA
     120       130       140      




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:06:52 2016 done: Sun Nov  6 13:06:52 2016
 Total Scan time:  1.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]