Result of FASTA (omim) for
pFN21AE1625
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1625, 142 aa
1>>>pF1KE1625 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6714+/-0.000377; mu= 14.5159+/- 0.023
mean_var=53.1045+/-10.821, 0's: 0 Z-trim(111.3): 33 B-trim: 633 in 1/55
Lambda= 0.175998
statistics sampled from 19827 (19852) to 19827 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.233), width: 16
Scan time: 4.700
The best scores are: opt bits E(85289)
NP_066972 (OMIM: 606748) coactosin-like protein [H ( 142) 922 241.8 2.8e-64
NP_001014436 (OMIM: 610106) drebrin-like protein i ( 430) 152 46.6 5.1e-05
NP_054782 (OMIM: 610106) drebrin-like protein isof ( 431) 152 46.6 5.1e-05
XP_011513627 (OMIM: 610106) PREDICTED: drebrin-lik ( 438) 152 46.6 5.1e-05
NP_001116428 (OMIM: 610106) drebrin-like protein i ( 439) 152 46.6 5.1e-05
>>NP_066972 (OMIM: 606748) coactosin-like protein [Homo (142 aa)
initn: 922 init1: 922 opt: 922 Z-score: 1274.9 bits: 241.8 E(85289): 2.8e-64
Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
70 80 90 100 110 120
130 140
pF1KE1 EEDFIKSELKKAGGANYDAQTE
::::::::::::::::::::::
NP_066 EEDFIKSELKKAGGANYDAQTE
130 140
>>NP_001014436 (OMIM: 610106) drebrin-like protein isofo (430 aa)
initn: 98 init1: 98 opt: 152 Z-score: 211.2 bits: 46.6 E(85289): 5.1e-05
Smith-Waterman score: 152; 23.8% identity (58.5% similar) in 147 aa overlap (1-142:1-145)
10 20 30 40 50
pF1KE1 MATKIDKE--ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDD
::...... : . :: : . : . :. : :.:.. : : . ...... ..
NP_001 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVIS
..:: : . : : ::.::.: ::.:. .... .. . . ... .
NP_001 KVMYAFCR--VKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
70 80 90 100 110
120 130 140
pF1KE1 DRKELEEDFIKSELKKAGGANYDAQTE
....: . : .. ::.::::. . :
NP_001 AEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDS
120 130 140 150 160 170
>>NP_054782 (OMIM: 610106) drebrin-like protein isoform (431 aa)
initn: 98 init1: 98 opt: 152 Z-score: 211.1 bits: 46.6 E(85289): 5.1e-05
Smith-Waterman score: 152; 23.8% identity (58.5% similar) in 147 aa overlap (1-142:1-145)
10 20 30 40 50
pF1KE1 MATKIDKE--ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDD
::...... : . :: : . : . :. : :.:.. : : . ...... ..
NP_054 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVIS
..:: : . : : ::.::.: ::.:. .... .. . . ... .
NP_054 KVMYAFCR--VKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
70 80 90 100 110
120 130 140
pF1KE1 DRKELEEDFIKSELKKAGGANYDAQTE
....: . : .. ::.::::. . :
NP_054 AEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDS
120 130 140 150 160 170
>>XP_011513627 (OMIM: 610106) PREDICTED: drebrin-like pr (438 aa)
initn: 98 init1: 98 opt: 152 Z-score: 211.0 bits: 46.6 E(85289): 5.1e-05
Smith-Waterman score: 152; 23.8% identity (58.5% similar) in 147 aa overlap (1-142:1-145)
10 20 30 40 50
pF1KE1 MATKIDKE--ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDD
::...... : . :: : . : . :. : :.:.. : : . ...... ..
XP_011 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVIS
..:: : . : : ::.::.: ::.:. .... .. . . ... .
XP_011 KVMYAFCR--VKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
70 80 90 100 110
120 130 140
pF1KE1 DRKELEEDFIKSELKKAGGANYDAQTE
....: . : .. ::.::::. . :
XP_011 AEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDS
120 130 140 150 160 170
>>NP_001116428 (OMIM: 610106) drebrin-like protein isofo (439 aa)
initn: 98 init1: 98 opt: 152 Z-score: 211.0 bits: 46.6 E(85289): 5.1e-05
Smith-Waterman score: 152; 23.8% identity (58.5% similar) in 147 aa overlap (1-142:1-145)
10 20 30 40 50
pF1KE1 MATKIDKE--ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDD
::...... : . :: : . : . :. : :.:.. : : . ...... ..
NP_001 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVIS
..:: : . : : ::.::.: ::.:. .... .. . . ... .
NP_001 KVMYAFCR--VKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
70 80 90 100 110
120 130 140
pF1KE1 DRKELEEDFIKSELKKAGGANYDAQTE
....: . : .. ::.::::. . :
NP_001 AEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDS
120 130 140 150 160 170
142 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:03:38 2016 done: Sun Nov 6 14:03:38 2016
Total Scan time: 4.700 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]