FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1625, 142 aa
  1>>>pF1KE1625 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4565+/-0.00084; mu= 9.7563+/- 0.050
 mean_var=50.6298+/-10.334, 0's: 0 Z-trim(104.5): 20  B-trim: 208 in 1/49
 Lambda= 0.180248
 statistics sampled from 7943 (7953) to 7943 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.244), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS10947.1 COTL1 gene_id:23406|Hs108|chr16        ( 142)  922 247.4 2.3e-66


>>CCDS10947.1 COTL1 gene_id:23406|Hs108|chr16             (142 aa)
 initn: 922 init1: 922 opt: 922  Z-score: 1305.0  bits: 247.4 E(32554): 2.3e-66
Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
               70        80        90       100       110       120

              130       140  
pF1KE1 EEDFIKSELKKAGGANYDAQTE
       ::::::::::::::::::::::
CCDS10 EEDFIKSELKKAGGANYDAQTE
              130       140  




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:03:37 2016 done: Sun Nov  6 14:03:38 2016
 Total Scan time:  1.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]