FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1621, 135 aa
  1>>>pF1KE1621 135 - 135 aa - 135 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1324+/-0.000309; mu= 12.6748+/- 0.019
 mean_var=65.6769+/-13.047, 0's: 0 Z-trim(116.1): 7  B-trim: 0 in 0/55
 Lambda= 0.158259
 statistics sampled from 27065 (27069) to 27065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.317), width:  16
 Scan time:  4.730

The best scores are:                                      opt bits E(85289)
NP_115662 (OMIM: 612382) mediator of RNA polymeras ( 135)  892 211.7   3e-55


>>NP_115662 (OMIM: 612382) mediator of RNA polymerase II  (135 aa)
 initn: 892 init1: 892 opt: 892  Z-score: 1112.9  bits: 211.7 E(85289): 3e-55
Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED
               70        80        90       100       110       120

              130     
pF1KE1 MAKYRSIRGEDHPPS
       :::::::::::::::
NP_115 MAKYRSIRGEDHPPS
              130     




135 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:41:40 2016 done: Sun Nov  6 09:41:41 2016
 Total Scan time:  4.730 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]