Result of FASTA (omim) for
pFN21AE1620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1620, 132 aa
1>>>pF1KE1620 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7582+/-0.000444; mu= 13.3987+/- 0.027
mean_var=56.6033+/-11.208, 0's: 0 Z-trim(109.7): 41 B-trim: 506 in 1/49
Lambda= 0.170472
statistics sampled from 17939 (17980) to 17939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.211), width: 16
Scan time: 4.420
The best scores are: opt bits E(85289)
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 850 217.2 6.1e-57
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 587 152.5 1.8e-37
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 563 146.6 1.1e-35
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 543 141.7 3.2e-34
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 505 132.4 2.1e-31
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 480 126.3 1.8e-29
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 468 123.3 1.2e-28
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 433 114.7 4.9e-26
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 402 107.0 8.8e-24
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 350 94.2 5e-20
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 307 83.7 9.8e-17
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 295 80.7 7.6e-16
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 280 77.0 1e-14
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 281 77.4 1.1e-14
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 260 72.1 3e-13
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 260 72.1 3e-13
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 260 72.1 3e-13
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 253 70.4 9.7e-13
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 219 62.0 3.2e-10
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 217 61.6 5e-10
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 215 61.1 7.2e-10
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 164 48.5 3.6e-06
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 134 41.1 0.00061
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 134 41.2 0.00079
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 134 41.2 0.00079
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 117 36.8 0.008
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 850 init1: 850 opt: 850 Z-score: 1143.2 bits: 217.2 E(85289): 6.1e-57
Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
::::::::::::
NP_001 KGVTSTRVYERA
130
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 585 init1: 571 opt: 587 Z-score: 793.7 bits: 152.5 E(85289): 1.8e-37
Smith-Waterman score: 587; 67.2% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: . :.:::::::::::::::: .:::.::::....:::..::: .::.:::..::::::
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: :::::.:.:::.::.:: .::. : : .::.:::: :::::: . :.:.:: :
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
:::. ::.::.
NP_002 KGVVCTRIYEKV
130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 557 init1: 557 opt: 563 Z-score: 761.7 bits: 146.6 E(85289): 1.1e-35
Smith-Waterman score: 563; 64.9% identity (84.7% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..:::::
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::.. .
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
.. ::.::.
NP_004 GTAVCTRTYEKEA
130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 537 init1: 537 opt: 543 Z-score: 735.5 bits: 141.7 E(85289): 3.2e-34
Smith-Waterman score: 543; 69.8% identity (87.9% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..:::::
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::..
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
XP_011 QLRNVK
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 533 init1: 497 opt: 505 Z-score: 684.7 bits: 132.4 E(85289): 2.1e-31
Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. ..
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
:...: ::.:
NP_001 GDVVAVRHYEKA
130
>>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa)
initn: 490 init1: 472 opt: 480 Z-score: 650.0 bits: 126.3 E(85289): 1.8e-29
Smith-Waterman score: 480; 60.3% identity (87.9% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:.
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KE1 KGVTSTRVYERA
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa)
initn: 467 init1: 443 opt: 468 Z-score: 635.4 bits: 123.3 E(85289): 1.2e-28
Smith-Waterman score: 468; 55.2% identity (85.6% similar) in 125 aa overlap (7-131:9-133)
10 20 30 40 50
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF
: :.::.:..::.::::.:::.: ::...::::. ::. .: .:::.:::.
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
:.:..: ::..:.:.::: ::.... .. :.::. :.:::: .:: :: .: ::::::
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KE1 VMKGVTSTRVYERA
::..:: ::.::.
NP_001 VMNNVTCTRIYEKVE
130
>>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa)
initn: 549 init1: 433 opt: 433 Z-score: 588.4 bits: 114.7 E(85289): 4.9e-26
Smith-Waterman score: 531; 59.9% identity (78.2% similar) in 142 aa overlap (1-131:1-142)
10 20 30 40
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEV-----------GVGFATRKVAGMAKPNMIISVNGDV
: :::.::::::.:.::::::: . :::::::.::.:.::. :: :::.
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKR
.:.:..:::::::::: :: ::::.::::::::: .::::: :::.:::::. ::. :.
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
70 80 90 100 110 120
110 120 130
pF1KE1 EDDKLVVECVMKGVTSTRVYERA
: ::.. . .. ::.::.
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
130 140
>>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa)
initn: 436 init1: 400 opt: 402 Z-score: 548.0 bits: 107.0 E(85289): 8.8e-24
Smith-Waterman score: 402; 50.8% identity (80.2% similar) in 126 aa overlap (9-132:8-128)
10 20 30 40 50
pF1KE1 MCDAFVGTWK--LVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF
:. :... : .. :::::::.:....::..::: .:: ..:.. :::
NP_001 MQLKEKDWRSALIKTAN-----QQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
::::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:.
NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
60 70 80 90 100 110
120 130
pF1KE1 VMKGVTSTRVYERA
.. :...: ::.:
NP_001 TFGDVVAVRHYEKA
120
>>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa)
initn: 357 init1: 342 opt: 350 Z-score: 480.6 bits: 94.2 E(85289): 5e-20
Smith-Waterman score: 350; 63.4% identity (90.2% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KE1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
: .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
::::: ::.::::.:::::. :
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE
70 80 90
132 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:06:29 2016 done: Sun Nov 6 16:06:30 2016
Total Scan time: 4.420 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]