FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1619, 132 aa
  1>>>pF1KE1619 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7306+/-0.000567; mu= 16.3641+/- 0.034
 mean_var=83.4737+/-16.319, 0's: 0 Z-trim(115.2): 3  B-trim: 65 in 2/50
 Lambda= 0.140378
 statistics sampled from 15805 (15807) to 15805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.486), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS10839.1 AGRP gene_id:181|Hs108|chr16           ( 132)  918 193.9 2.4e-50


>>CCDS10839.1 AGRP gene_id:181|Hs108|chr16                (132 aa)
 initn: 918 init1: 918 opt: 918  Z-score: 1017.2  bits: 193.9 E(32554): 2.4e-50
Smith-Waterman score: 918; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
               70        80        90       100       110       120

              130  
pF1KE1 KLGTAMNPCSRT
       ::::::::::::
CCDS10 KLGTAMNPCSRT
              130  




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:50:36 2016 done: Sun Nov  6 09:50:37 2016
 Total Scan time:  1.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]