Result of FASTA (omim) for
pFN21AE1618
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1618, 128 aa
1>>>pF1KE1618 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3960+/-0.000311; mu= 10.8840+/- 0.019
mean_var=71.1070+/-14.355, 0's: 0 Z-trim(117.4): 103 B-trim: 0 in 0/51
Lambda= 0.152096
statistics sampled from 29357 (29460) to 29357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.345), width: 16
Scan time: 4.720
The best scores are: opt bits E(85289)
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 855 195.8 1.5e-50
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 855 195.8 1.5e-50
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 855 195.8 1.5e-50
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 855 195.8 1.5e-50
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 855 195.8 1.5e-50
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 855 195.8 1.5e-50
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 855 195.9 1.6e-50
XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 634 147.4 7.2e-36
XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 634 147.4 7.2e-36
XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 634 147.4 7.2e-36
XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 634 147.4 7.2e-36
XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 634 147.5 9e-36
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 481 113.8 9.2e-26
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 481 113.8 9.2e-26
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 481 113.8 9.2e-26
NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 483 114.4 9.3e-26
NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 483 114.4 9.3e-26
NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 483 114.4 9.3e-26
NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 483 114.4 9.3e-26
NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 483 114.4 9.3e-26
NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 483 114.4 9.3e-26
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 485 115.1 1.7e-25
NP_001307951 (OMIM: 191321) ubiquitin-60S ribosoma ( 99) 458 108.7 2.1e-24
NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sap ( 81) 304 74.8 2.6e-14
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 197 51.5 5.3e-07
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 183 48.5 4.7e-06
NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133) 164 44.2 7e-05
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 163 44.3 0.0002
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 163 44.4 0.00025
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 162 44.1 0.00025
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 162 44.1 0.00027
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 162 44.1 0.00027
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 154 42.1 0.00038
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 159 43.5 0.00045
NP_981957 (OMIM: 611127) ubiquitin-like protein 4B ( 174) 153 41.9 0.00047
XP_011526244 (OMIM: 607990) PREDICTED: E3 ubiquiti ( 758) 160 43.8 0.00054
NP_001041666 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 43.8 0.00056
NP_001276979 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 43.8 0.00056
NP_001276980 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 43.8 0.00056
NP_001276981 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 43.8 0.00056
NP_037414 (OMIM: 607990) E3 ubiquitin-protein liga ( 806) 160 43.8 0.00057
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 156 42.8 0.0006
XP_016869742 (OMIM: 615211) PREDICTED: E3 ubiquiti ( 729) 154 42.5 0.0013
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793) 154 42.5 0.0014
NP_690856 (OMIM: 615211) E3 ubiquitin-protein liga ( 802) 154 42.5 0.0014
NP_079230 (OMIM: 616388) ubiquitin domain-containi ( 227) 146 40.4 0.0017
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308) 143 39.8 0.0034
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362) 143 39.9 0.0039
NP_005044 (OMIM: 600061) UV excision repair protei ( 363) 143 39.9 0.0039
XP_016865511 (OMIM: 610174) PREDICTED: ubiquitin d ( 190) 139 38.8 0.0042
>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_003 LRPKKKVK
>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_001 LRPKKKVK
>>NP_001307947 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_001 LRPKKKVK
>>NP_001307949 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_001 LRPKKKVK
>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_001 LRPKKKVK
>>NP_001307948 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1028.3 bits: 195.8 E(85289): 1.5e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
NP_001 LRPKKKVK
>>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1027.9 bits: 195.9 E(85289): 1.6e-50
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:8-135)
10 20 30 40 50
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
70 80 90 100 110 120
120
pF1KE1 KCGHTNNLRPKKKVK
:::::::::::::::
NP_001 KCGHTNNLRPKKKVK
130
>>XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-60S r (156 aa)
initn: 634 init1: 634 opt: 634 Z-score: 764.9 bits: 147.4 E(85289): 7.2e-36
Smith-Waterman score: 789; 82.1% identity (82.1% similar) in 156 aa overlap (1-128:1-156)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRK----------------------
::::::::::::::::::::::::::::::::::::::
XP_005 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPP
70 80 90 100 110 120
100 110 120
pF1KE1 ------CYARLHPRAVNCRKKKCGHTNNLRPKKKVK
::::::::::::::::::::::::::::::
XP_005 LLSLCRCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
130 140 150
>>XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-60S r (156 aa)
initn: 634 init1: 634 opt: 634 Z-score: 764.9 bits: 147.4 E(85289): 7.2e-36
Smith-Waterman score: 789; 82.1% identity (82.1% similar) in 156 aa overlap (1-128:1-156)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRK----------------------
::::::::::::::::::::::::::::::::::::::
XP_006 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPP
70 80 90 100 110 120
100 110 120
pF1KE1 ------CYARLHPRAVNCRKKKCGHTNNLRPKKKVK
::::::::::::::::::::::::::::::
XP_006 LLSLCRCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
130 140 150
>>XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-60S r (156 aa)
initn: 634 init1: 634 opt: 634 Z-score: 764.9 bits: 147.4 E(85289): 7.2e-36
Smith-Waterman score: 789; 82.1% identity (82.1% similar) in 156 aa overlap (1-128:1-156)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRK----------------------
::::::::::::::::::::::::::::::::::::::
XP_005 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPP
70 80 90 100 110 120
100 110 120
pF1KE1 ------CYARLHPRAVNCRKKKCGHTNNLRPKKKVK
::::::::::::::::::::::::::::::
XP_005 LLSLCRCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
130 140 150
128 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:24:01 2016 done: Sun Nov 6 13:24:02 2016
Total Scan time: 4.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]