Result of FASTA (ccds) for
pFN21AE1618
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1618, 128 aa
1>>>pF1KE1618 128 - 128 aa - 128 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5920+/-0.000676; mu= 9.7119+/- 0.041
mean_var=69.4804+/-13.900, 0's: 0 Z-trim(110.4): 41 B-trim: 0 in 0/50
Lambda= 0.153866
statistics sampled from 11573 (11615) to 11573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.357), width: 16
Scan time: 1.560
The best scores are: opt bits E(32554)
CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 ( 128) 855 197.9 1.4e-51
CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 ( 156) 481 115.0 1.6e-26
CCDS11177.1 UBB gene_id:7314|Hs108|chr17 ( 229) 483 115.5 1.7e-26
CCDS9260.1 UBC gene_id:7316|Hs108|chr12 ( 685) 485 116.1 3.1e-26
CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 ( 81) 304 75.5 6.2e-15
>>CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 (128 aa)
initn: 855 init1: 855 opt: 855 Z-score: 1039.6 bits: 197.9 E(32554): 1.4e-51
Smith-Waterman score: 855; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
pF1KE1 LRPKKKVK
::::::::
CCDS12 LRPKKKVK
>>CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 (156 aa)
initn: 507 init1: 481 opt: 481 Z-score: 589.6 bits: 115.0 E(32554): 1.6e-26
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::
CCDS33 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
>>CCDS11177.1 UBB gene_id:7314|Hs108|chr17 (229 aa)
initn: 952 init1: 483 opt: 483 Z-score: 589.4 bits: 115.5 E(32554): 1.7e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:77-153)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS11 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::.
CCDS11 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
110 120 130 140 150 160
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS11 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
170 180 190 200 210 220
>--
initn: 481 init1: 481 opt: 481 Z-score: 587.0 bits: 115.0 E(32554): 2.2e-26
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::
CCDS11 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
>--
initn: 474 init1: 474 opt: 474 Z-score: 578.6 bits: 113.5 E(32554): 6.6e-26
Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:154-228)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
::::::::::::::::::::::::::::::
CCDS11 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
130 140 150 160 170 180
40 50 60 70 80 90
pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
100 110 120
pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
>>CCDS9260.1 UBC gene_id:7316|Hs108|chr12 (685 aa)
initn: 4237 init1: 485 opt: 485 Z-score: 584.4 bits: 116.1 E(32554): 3.1e-26
Smith-Waterman score: 485; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:609-685)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
580 590 600 610 620 630
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::.
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV
640 650 660 670 680
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
>--
initn: 3297 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:381-457)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
360 370 380 390 400 410
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::.
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
420 430 440 450 460 470
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
480 490 500 510 520 530
>--
initn: 1895 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:77-153)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::.
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
110 120 130 140 150 160
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
170 180 190 200 210 220
>--
initn: 952 init1: 483 opt: 483 Z-score: 582.0 bits: 115.7 E(32554): 4.2e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:229-305)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
200 210 220 230 240 250
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::.
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
260 270 280 290 300 310
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
320 330 340 350 360 370
>--
initn: 481 init1: 481 opt: 481 Z-score: 579.6 bits: 115.3 E(32554): 5.8e-26
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
::::::::::::::::
CCDS92 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
>--
initn: 483 init1: 481 opt: 481 Z-score: 579.6 bits: 115.3 E(32554): 5.8e-26
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:533-608)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
510 520 530 540 550 560
40 50 60 70 80 90
pF1KE1 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN
::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
570 580 590 600 610 620
100 110 120
pF1KE1 CDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
630 640 650 660 670 680
>--
initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25
Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:458-532)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
::::::::::::::::::::::::::::::
CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
430 440 450 460 470 480
40 50 60 70 80 90
pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
490 500 510 520 530 540
100 110 120
pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
550 560 570 580 590 600
>--
initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25
Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:154-228)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
::::::::::::::::::::::::::::::
CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
130 140 150 160 170 180
40 50 60 70 80 90
pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
190 200 210 220 230 240
100 110 120
pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
250 260 270 280 290 300
>--
initn: 474 init1: 474 opt: 474 Z-score: 571.2 bits: 113.7 E(32554): 1.7e-25
Smith-Waterman score: 474; 100.0% identity (100.0% similar) in 75 aa overlap (2-76:306-380)
10 20 30
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
::::::::::::::::::::::::::::::
CCDS92 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
280 290 300 310 320 330
40 50 60 70 80 90
pF1KE1 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS92 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
340 350 360 370 380 390
100 110 120
pF1KE1 DKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
CCDS92 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
400 410 420 430 440 450
>>CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 (81 aa)
initn: 312 init1: 303 opt: 304 Z-score: 381.6 bits: 75.5 E(32554): 6.2e-15
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-84:1-81)
10 20 30 40 50 60
pF1KE1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
CCDS96 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
: :.::::: :::: .:::
CCDS96 ILGGSVLHLVLALRGG---GGLRQ
70 80
128 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:24:01 2016 done: Sun Nov 6 13:24:01 2016
Total Scan time: 1.560 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]