FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1612, 119 aa
  1>>>pF1KE1612 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8360+/-0.00059; mu= 13.0303+/- 0.035
 mean_var=58.7234+/-11.410, 0's: 0 Z-trim(111.9): 47  B-trim: 57 in 1/50
 Lambda= 0.167367
 statistics sampled from 12698 (12745) to 12698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.392), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7          ( 119)  813 203.6 2.4e-53
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  231 63.0 4.2e-11


>>CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7               (119 aa)
 initn: 813 init1: 813 opt: 813  Z-score: 1071.1  bits: 203.6 E(32554): 2.4e-53
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE1 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
               70        80        90       100       110         

>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17               (99 aa)
 initn: 241 init1: 222 opt: 231  Z-score: 312.8  bits: 63.0 E(32554): 4.2e-11
Smith-Waterman score: 231; 36.0% identity (65.0% similar) in 100 aa overlap (5-99:1-98)

               10        20             30        40        50     
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVSYQLSSR
           :   ..:: : . :  . : :     ..   . ::. :..:.::..:. ::. .. 
CCDS11     MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTS
                   10        20        30        40        50      

          60        70        80        90       100       110     
pF1KE1 STCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGN
       : : . .::: ::  ...:.:: :.::: .::.::  .:  .:.                
CCDS11 SHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLD--KKTQTPKL               
         60        70        80        90                          

           
pF1KE1 QTTC




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:17:58 2016 done: Sun Nov  6 11:17:58 2016
 Total Scan time:  1.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]