FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1609, 114 aa
  1>>>pF1KE1609 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7064+/-0.000527; mu= 13.7551+/- 0.032
 mean_var=58.4110+/-11.342, 0's: 0 Z-trim(113.4): 6  B-trim: 0 in 0/52
 Lambda= 0.167814
 statistics sampled from 14005 (14011) to 14005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.43), width:  16
 Scan time:  1.410

The best scores are:                                      opt bits E(32554)
CCDS14449.1 SH3BGRL gene_id:6451|Hs108|chrX        ( 114)  747 187.8 1.2e-48
CCDS13666.1 SH3BGR gene_id:6450|Hs108|chr21        ( 239)  502 128.7 1.6e-30
CCDS4991.1 SH3BGRL2 gene_id:83699|Hs108|chr6       ( 107)  443 114.2 1.6e-26
CCDS82675.1 SH3BGR gene_id:6450|Hs108|chr21        (  97)  279 74.5 1.4e-14
CCDS33560.1 SH3BGR gene_id:6450|Hs108|chr21        ( 128)  272 72.9 5.5e-14


>>CCDS14449.1 SH3BGRL gene_id:6451|Hs108|chrX             (114 aa)
 initn: 747 init1: 747 opt: 747  Z-score: 986.8  bits: 187.8 E(32554): 1.2e-48
Smith-Waterman score: 747; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPA
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 TGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQA
               70        80        90       100       110    

>>CCDS13666.1 SH3BGR gene_id:6450|Hs108|chr21             (239 aa)
 initn: 532 init1: 502 opt: 502  Z-score: 661.7  bits: 128.7 E(32554): 1.6e-30
Smith-Waterman score: 502; 65.4% identity (87.9% similar) in 107 aa overlap (1-107:64-170)

                                             10        20        30
pF1KE1                               MVIRVYIASSSGSTAIKKKQQDVLGFLEAN
                                     :::.:..:.:::: ::.::::.:.::::::
CCDS13 LACLCHCQDLSSGAFPDRGVLGGVLFPTVEMVIKVFVATSSGSIAIRKKQQEVVGFLEAN
            40        50        60        70        80        90   

               40        50        60        70        80        90
pF1KE1 KIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFEARENNA
       :: :.: :::..:.::.::::::: ...: .: ::::::::: :: ::.:.:: :.:.: 
CCDS13 KIDFKELDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENI
           100       110       120       130       140       150   

              100       110                                        
pF1KE1 VYAFLGLTAPPGSKEAEVQAKQQA                                    
       .:.::::. :: :: .:                                           
CCDS13 IYSFLGLAPPPDSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIA
           160       170       180       190       200       210   

>>CCDS4991.1 SH3BGRL2 gene_id:83699|Hs108|chr6            (107 aa)
 initn: 442 init1: 442 opt: 443  Z-score: 589.4  bits: 114.2 E(32554): 1.6e-26
Smith-Waterman score: 443; 63.6% identity (86.0% similar) in 107 aa overlap (1-107:1-106)

               10        20        30        40        50        60
pF1KE1 MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPA
       :::::.:::::: .:::::::::. ::::::: ::: ::. .::.:.:: .::: ...:.
CCDS49 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPT
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 TGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQA
        : :::::::: ..: ::::.:::..:.:.:..::::  :  ...::       
CCDS49 QGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLK-PRLASKAEP      
               70        80        90        100             

>>CCDS82675.1 SH3BGR gene_id:6450|Hs108|chr21             (97 aa)
 initn: 307 init1: 279 opt: 279  Z-score: 375.5  bits: 74.5 E(32554): 1.4e-14
Smith-Waterman score: 279; 64.4% identity (83.1% similar) in 59 aa overlap (49-107:1-59)

       20        30        40        50        60        70        
pF1KE1 KQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGD
                                     :::::: ...: .: ::::::::: :: ::
CCDS82                               MRENVPGEKKPQNGIPLPPQIFNEEQYCGD
                                             10        20        30

       80        90       100       110                            
pF1KE1 YDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQA                        
       .:.:: :.:.: .:.::::. :: ::: :                               
CCDS82 FDSFFSAKEENIIYSFLGLAPPPDSKEEEGETATEETEEIAMEGAEGEAEEEEETAEGEE
               40        50        60        70        80        90

>>CCDS33560.1 SH3BGR gene_id:6450|Hs108|chr21             (128 aa)
 initn: 285 init1: 272 opt: 272  Z-score: 364.6  bits: 72.9 E(32554): 5.5e-14
Smith-Waterman score: 272; 62.7% identity (83.1% similar) in 59 aa overlap (49-107:1-59)

       20        30        40        50        60        70        
pF1KE1 KQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGD
                                     :::::: ...: .: ::::::::: :: ::
CCDS33                               MRENVPGEKKPQNGIPLPPQIFNEEQYCGD
                                             10        20        30

       80        90       100       110                            
pF1KE1 YDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQA                        
       .:.:: :.:.: .:.::::. :: :: .:                               
CCDS33 FDSFFSAKEENIIYSFLGLAPPPDSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEE
               40        50        60        70        80        90




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:45:57 2016 done: Sun Nov  6 12:45:58 2016
 Total Scan time:  1.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]