FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1606, 112 aa
  1>>>pF1KE1606 112 - 112 aa - 112 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6917+/-0.000254; mu= 13.6083+/- 0.016
 mean_var=60.4873+/-11.808, 0's: 0 Z-trim(121.6): 19  B-trim: 162 in 1/52
 Lambda= 0.164908
 statistics sampled from 38486 (38509) to 38486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.452), width:  16
 Scan time:  5.010

The best scores are:                                      opt bits E(85289)
NP_006655 (OMIM: 604833) C-C motif chemokine 27 pr ( 112)  777 191.9 1.8e-49
NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127)  219 59.2 1.8e-09
NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127)  219 59.2 1.8e-09
NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127)  219 59.2 1.8e-09
NP_001288804 (OMIM: 605240) C-C motif chemokine 28 (  80)  159 44.8 2.5e-05


>>NP_006655 (OMIM: 604833) C-C motif chemokine 27 precur  (112 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 1009.3  bits: 191.9 E(85289): 1.8e-49
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG
               70        80        90       100       110  

>>NP_001288803 (OMIM: 605240) C-C motif chemokine 28 iso  (127 aa)
 initn: 220 init1: 173 opt: 219  Z-score: 291.1  bits: 59.2 E(85289): 1.8e-09
Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94)

               10        20        30        40        50        60
pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
                                .:: ...:::.. .. .: .::..: . ..:.:::
NP_001    MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG
                  10        20        30         40        50      

               70        80        90       100       110          
pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG        
       :: : : .::. .: ::. :.: ...::.. :  : .:                      
NP_001 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG
         60        70        80        90       100       110      

NP_001 KHETYGHKTPY
        120       

>>NP_001288802 (OMIM: 605240) C-C motif chemokine 28 iso  (127 aa)
 initn: 220 init1: 173 opt: 219  Z-score: 291.1  bits: 59.2 E(85289): 1.8e-09
Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94)

               10        20        30        40        50        60
pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
                                .:: ...:::.. .. .: .::..: . ..:.:::
NP_001    MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG
                  10        20        30         40        50      

               70        80        90       100       110          
pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG        
       :: : : .::. .: ::. :.: ...::.. :  : .:                      
NP_001 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG
         60        70        80        90       100       110      

NP_001 KHETYGHKTPY
        120       

>>NP_683513 (OMIM: 605240) C-C motif chemokine 28 isofor  (127 aa)
 initn: 220 init1: 173 opt: 219  Z-score: 291.1  bits: 59.2 E(85289): 1.8e-09
Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (26-98:23-94)

               10        20        30        40        50        60
pF1KE1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
                                .:: ...:::.. .. .: .::..: . ..:.:::
NP_683    MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG
                  10        20        30         40        50      

               70        80        90       100       110          
pF1KE1 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG        
       :: : : .::. .: ::. :.: ...::.. :  : .:                      
NP_683 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG
         60        70        80        90       100       110      

NP_683 KHETYGHKTPY
        120       

>>NP_001288804 (OMIM: 605240) C-C motif chemokine 28 iso  (80 aa)
 initn: 161 init1: 150 opt: 159  Z-score: 216.7  bits: 44.8 E(85289): 2.5e-05
Smith-Waterman score: 159; 45.5% identity (75.0% similar) in 44 aa overlap (55-98:4-47)

           30        40        50        60        70        80    
pF1KE1 FLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADGDCHLQAFVLHLAQRSICIHPQNPS
                                     .:.::::: : : .::. .: ::. :.: .
NP_001                            MCRIQRADGDCDLAAVILHVKRRRICVSPHNHT
                                          10        20        30   

           90       100       110                     
pF1KE1 LSQWFEHQERKLHGTLPKLNFGMLRKMG                   
       ..::.. :  : .:                                 
NP_001 VKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY
            40        50        60        70        80




112 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:31:02 2016 done: Mon Nov  7 15:31:03 2016
 Total Scan time:  5.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]