FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1588, 102 aa
  1>>>pF1KE1588 102 - 102 aa - 102 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3869+/-0.000232; mu= 5.6253+/- 0.015
 mean_var=97.0950+/-19.212, 0's: 0 Z-trim(125.8): 2  B-trim: 453 in 1/52
 Lambda= 0.130159
 statistics sampled from 50184 (50191) to 50184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.588), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(85289)
NP_004385 (OMIM: 600954) death-associated protein  ( 102)  724 144.3 3.2e-35
NP_001278892 (OMIM: 600954) death-associated prote ( 204)  361 76.3 1.9e-14


>>NP_004385 (OMIM: 600954) death-associated protein 1 is  (102 aa)
 initn: 724 init1: 724 opt: 724  Z-score: 753.2  bits: 144.3 E(85289): 3.2e-35
Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS
               10        20        30        40        50        60

               70        80        90       100  
pF1KE1 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK
       ::::::::::::::::::::::::::::::::::::::::::
NP_004 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK
               70        80        90       100  

>>NP_001278892 (OMIM: 600954) death-associated protein 1  (204 aa)
 initn: 386 init1: 355 opt: 361  Z-score: 380.3  bits: 76.3 E(85289): 1.9e-14
Smith-Waterman score: 361; 59.4% identity (74.3% similar) in 101 aa overlap (1-100:1-95)

               10        20        30        40        50          
pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVF-I
       ::::::::::::::::::::::::::::::::::::::::::::::::::   : .   .
NP_001 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPRVTKISPRRL
               10        20        30        40        50        60

      60        70        80        90       100                   
pF1KE1 SGVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK                 
          ..:.   .:: .. .  :.: .: ..   :    ..::                   
NP_001 RRWLTRS--RMPPWTS-ILPQEPSTSSSHASEP---GVHQPAPWPRLCCTWYFPDRENQQ
                 70         80        90          100       110    

NP_001 FRPNPTLLGNLRQNQVLCPLPYISIFKTRNSSSPNLVYGESGWMSFEDHCAPRGAISRIC
          120       130       140       150       160       170    




102 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:40:11 2016 done: Sun Nov  6 21:40:12 2016
 Total Scan time:  3.890 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]