Result of FASTA (omim) for
pFN21AE1587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1587, 94 aa
1>>>pF1KE1587 94 - 94 aa - 94 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8296+/-0.000299; mu= 10.3497+/- 0.019
mean_var=48.8301+/- 9.532, 0's: 0 Z-trim(116.3): 65 B-trim: 0 in 0/55
Lambda= 0.183540
statistics sampled from 27227 (27292) to 27227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.32), width: 16
Scan time: 4.210
The best scores are: opt bits E(85289)
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 621 171.5 1.8e-43
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 621 171.5 2.3e-43
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 621 171.5 2.3e-43
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 200 60.0 6.5e-10
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 198 59.5 9.5e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 198 59.5 9.5e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 198 59.5 1.4e-09
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 187 56.6 8.9e-09
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 187 56.6 8.9e-09
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 186 56.3 1.2e-08
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 175 53.4 7.4e-08
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 173 52.9 9.7e-08
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 173 52.9 9.8e-08
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 172 52.6 1.1e-07
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 172 52.6 1.1e-07
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 172 52.6 1.1e-07
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 172 52.6 1.1e-07
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 171 52.3 1.6e-07
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 168 51.6 2.9e-07
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 165 50.7 3.9e-07
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 165 50.7 3.9e-07
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 164 50.5 5.1e-07
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 163 50.2 5.7e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 161 49.7 8.7e-07
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 156 48.3 2.1e-06
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 148 46.2 9e-06
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 149 46.5 9.4e-06
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 149 46.5 9.4e-06
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 149 46.5 9.4e-06
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 147 46.0 1.2e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 144 45.2 2e-05
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 128 40.9 0.00034
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 128 41.0 0.00043
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 124 39.9 0.00089
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 124 39.9 0.00089
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 129 41.4 0.0011
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 119 38.6 0.0028
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 119 38.6 0.0028
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 119 38.6 0.0028
XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 119 38.6 0.0028
NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 119 38.6 0.0028
XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 119 38.6 0.0028
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 117 38.1 0.0037
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 119 38.7 0.0038
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 117 38.1 0.004
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 112 36.7 0.0069
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 113 37.0 0.0073
>>NP_002978 (OMIM: 601520) C-C motif chemokine 17 precur (94 aa)
initn: 621 init1: 621 opt: 621 Z-score: 901.4 bits: 171.5 E(85289): 1.8e-43
Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGRECCLEYFKGAIPLRKLKTWYQTSEDCSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPLKMLALVTLLLGASLQHIHAARGTNVGRECCLEYFKGAIPLRKLKTWYQTSEDCSRD
10 20 30 40 50 60
70 80 90
pF1KE1 AIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
::::::::::::::::::::::::::::::::::
NP_002 AIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
70 80 90
>>XP_011521558 (OMIM: 601520) PREDICTED: C-C motif chemo (122 aa)
initn: 621 init1: 621 opt: 621 Z-score: 899.6 bits: 171.5 E(85289): 2.3e-43
Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:29-122)
10 20 30
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGRE
::::::::::::::::::::::::::::::::
XP_011 MGELNSKPGCLPEQRDLHTETPSWAPGTMAPLKMLALVTLLLGASLQHIHAARGTNVGRE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 CCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLE
70 80 90 100 110 120
pF1KE1 RS
::
XP_011 RS
>>XP_016879019 (OMIM: 601520) PREDICTED: C-C motif chemo (123 aa)
initn: 621 init1: 621 opt: 621 Z-score: 899.5 bits: 171.5 E(85289): 2.3e-43
Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:30-123)
10 20 30
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGR
:::::::::::::::::::::::::::::::
XP_016 MGELNSKPAGCLPEQRDLHTETPSWAPGTMAPLKMLALVTLLLGASLQHIHAARGTNVGR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 ECCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ECCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSL
70 80 90 100 110 120
pF1KE1 ERS
:::
XP_016 ERS
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 200 init1: 180 opt: 200 Z-score: 299.0 bits: 60.0 E(85289): 6.5e-10
Smith-Waterman score: 200; 30.3% identity (69.7% similar) in 89 aa overlap (1-89:5-91)
10 20 30 40 50
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGRECCLEYFKGAIPLRKLKTWYQTSED
.: . .. :.:. ::.. . ..:: :::. : :: ... .:.:. .
NP_116 MKISVAAIPFFLLITIALGTKTES--SSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQ
10 20 30 40 50
60 70 80 90
pF1KE1 CSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
::. .:::.: .:...:..:..: :.. .: ..
NP_116 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
>>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa)
initn: 203 init1: 179 opt: 198 Z-score: 296.0 bits: 59.5 E(85289): 9.5e-10
Smith-Waterman score: 198; 31.0% identity (72.4% similar) in 87 aa overlap (7-90:4-90)
10 20 30 40 50
pF1KE1 MAPLKMLALVTLLLGASLQHIH---AARGTNVGRECCLEYFKGAIPLRKLKTWYQTSEDC
:.:.. .: ::: .: :.::..... ::..: . .: .... ::..:
NP_006 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSC
10 20 30 40 50
60 70 80 90
pF1KE1 SRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
:. :..:.: .:. .:. : .: :.. .. :..
NP_006 SQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa)
initn: 203 init1: 179 opt: 198 Z-score: 296.0 bits: 59.5 E(85289): 9.5e-10
Smith-Waterman score: 198; 31.0% identity (72.4% similar) in 87 aa overlap (7-90:4-90)
10 20 30 40 50
pF1KE1 MAPLKMLALVTLLLGASLQHIH---AARGTNVGRECCLEYFKGAIPLRKLKTWYQTSEDC
:.:.. .: ::: .: :.::..... ::..: . .: .... ::..:
XP_016 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSC
10 20 30 40 50
60 70 80 90
pF1KE1 SRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
:. :..:.: .:. .:. : .: :.. .. :..
XP_016 SQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa)
initn: 179 init1: 179 opt: 198 Z-score: 292.9 bits: 59.5 E(85289): 1.4e-09
Smith-Waterman score: 198; 31.0% identity (72.4% similar) in 87 aa overlap (7-90:58-144)
10 20 30
pF1KE1 MAPLKMLALVTLLLGASLQHIH---AARGTNVGREC
:.:.. .: ::: .: :.::..... :
XP_016 QGRLSLIKGDQAGGVWEKPEKGLICSIMMGLSLASAVLLASLLSLHLGTATRGSDISKTC
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 CLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLER
:..: . .: .... ::..::. :..:.: .:. .:. : .: :.. .. :..
XP_016 CFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQ
90 100 110 120 130 140
pF1KE1 S
XP_016 L
>>XP_005258077 (OMIM: 601394) PREDICTED: C-C motif chemo (120 aa)
initn: 136 init1: 87 opt: 187 Z-score: 278.6 bits: 56.6 E(85289): 8.9e-09
Smith-Waterman score: 187; 31.8% identity (71.8% similar) in 85 aa overlap (2-86:6-89)
10 20 30 40 50
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGRECCLEYFKGAIPLRKLKTWYQTSED
: :..:.:. .. .:: .. .. . .:. :::.:.. ..: :.: . :. . .
XP_005 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLP-RRLVVGYRKALN
10 20 30 40 50
60 70 80 90
pF1KE1 CSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
: ::.::: ..: .:..::. :.. .:
XP_005 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
60 70 80 90 100 110
>>NP_004581 (OMIM: 601394) C-C motif chemokine 16 precur (120 aa)
initn: 136 init1: 87 opt: 187 Z-score: 278.6 bits: 56.6 E(85289): 8.9e-09
Smith-Waterman score: 187; 31.8% identity (71.8% similar) in 85 aa overlap (2-86:6-89)
10 20 30 40 50
pF1KE1 MAPLKMLALVTLLLGASLQHIHAARGTNVGRECCLEYFKGAIPLRKLKTWYQTSED
: :..:.:. .. .:: .. .. . .:. :::.:.. ..: :.: . :. . .
NP_004 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLP-RRLVVGYRKALN
10 20 30 40 50
60 70 80 90
pF1KE1 CSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLERS
: ::.::: ..: .:..::. :.. .:
NP_004 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
60 70 80 90 100 110
>>NP_005055 (OMIM: 602494) C-C motif chemokine 23 isofor (137 aa)
initn: 207 init1: 176 opt: 186 Z-score: 276.2 bits: 56.3 E(85289): 1.2e-08
Smith-Waterman score: 186; 28.6% identity (68.1% similar) in 91 aa overlap (3-89:37-127)
10 20
pF1KE1 MAPLKMLALVTLL----LGASLQHIHAARGTN
::. .:. .: .: .. :::
NP_005 ALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHA
10 20 30 40 50 60
30 40 50 60 70 80
pF1KE1 VGRECCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYL
.. .::. : .:: :.....:. .::. ...:.: .:: .:..:..:.:. ...:
NP_005 TSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCMRML
70 80 90 100 110 120
90
pF1KE1 QSLERS
.
NP_005 KLDTRIKTRKN
130
94 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:05:19 2016 done: Sun Nov 6 14:05:20 2016
Total Scan time: 4.210 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]