Result of FASTA (omim) for
pFN21AE1586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1586, 94 aa
1>>>pF1KE1586 94 - 94 aa - 94 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7198+/-0.000305; mu= 11.5083+/- 0.019
mean_var=54.4647+/-10.717, 0's: 0 Z-trim(117.5): 70 B-trim: 0 in 0/54
Lambda= 0.173787
statistics sampled from 29405 (29485) to 29405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.346), width: 16
Scan time: 4.240
The best scores are: opt bits E(85289)
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 635 166.4 6e-42
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 635 166.4 6e-42
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 635 166.5 8.7e-42
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 252 70.4 4.8e-13
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 241 67.6 3.3e-12
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 241 67.6 3.3e-12
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 237 66.6 6.5e-12
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 231 65.1 1.8e-11
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 231 65.1 1.8e-11
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 219 62.1 1.5e-10
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 216 61.4 2.6e-10
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 213 60.6 4.1e-10
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 207 59.1 1.1e-09
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 198 56.9 5.8e-09
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 197 56.6 7.1e-09
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 198 56.9 7.2e-09
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 198 56.9 7.2e-09
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 196 56.4 8.5e-09
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 195 56.1 1.1e-08
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 189 54.7 3.4e-08
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 189 54.7 3.4e-08
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 189 54.7 3.4e-08
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 186 53.9 4.8e-08
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 181 52.6 1.2e-07
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 180 52.4 1.6e-07
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 180 52.4 1.6e-07
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 173 50.7 6.1e-07
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 170 49.9 1e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 170 49.9 1.1e-06
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 169 49.6 1.1e-06
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 163 48.1 2.9e-06
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 162 47.8 3.1e-06
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 161 47.6 3.7e-06
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 160 47.4 6.2e-06
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 160 47.4 6.2e-06
XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 160 47.4 6.3e-06
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 160 47.4 6.3e-06
NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 160 47.4 6.3e-06
XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 160 47.4 6.3e-06
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 160 47.5 8.2e-06
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 156 46.3 8.7e-06
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 155 46.1 1e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 153 45.6 1.7e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 153 45.6 1.7e-05
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 152 45.3 1.7e-05
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 150 44.8 2.4e-05
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 150 44.8 2.4e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 150 44.9 2.8e-05
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 148 44.3 3.7e-05
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 147 44.1 4.4e-05
>>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa)
initn: 635 init1: 635 opt: 635 Z-score: 874.1 bits: 166.4 E(85289): 6e-42
Smith-Waterman score: 635; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
10 20 30 40 50 60
70 80 90
pF1KE1 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::::::::::::::::::::::::::::::::::
XP_016 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
70 80 90
>>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa)
initn: 635 init1: 635 opt: 635 Z-score: 874.1 bits: 166.4 E(85289): 6e-42
Smith-Waterman score: 635; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
10 20 30 40 50 60
70 80 90
pF1KE1 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::::::::::::::::::::::::::::::::::
NP_006 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
70 80 90
>>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa)
initn: 635 init1: 635 opt: 635 Z-score: 871.2 bits: 166.5 E(85289): 8.7e-42
Smith-Waterman score: 635; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:55-148)
10 20 30
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDIS
::::::::::::::::::::::::::::::
XP_016 NCFQGRLSLIKGDQAGGVWEKPEKGLICSIMMGLSLASAVLLASLLSLHLGTATRGSDIS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 KTCCFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTCCFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKT
90 100 110 120 130 140
pF1KE1 PKQL
::::
XP_016 PKQL
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 249 init1: 230 opt: 252 Z-score: 355.2 bits: 70.4 E(85289): 4.8e-13
Smith-Waterman score: 252; 48.8% identity (73.8% similar) in 80 aa overlap (6-85:8-86)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
:. ::.:.. :: : .: ::: .:::.:. . :: ..: .: ::. ::
NP_996 MKLCVTVLSLLVLVAAFCSLAL-SAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
: ::.: :::::.::. : ..:::.:.
NP_996 QPAVVFQTKRGKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 243 init1: 218 opt: 241 Z-score: 340.3 bits: 67.6 E(85289): 3.3e-12
Smith-Waterman score: 241; 41.1% identity (73.3% similar) in 90 aa overlap (2-89:1-90)
10 20 30 40 50
pF1KE1 MMGLSLAS-AVLLASL-LSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
: .: :. :::: .. : .. .: ..: .:::.:. . .: ... .: ::..::
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
. .::: ::::..::. : ..:::::.: :.
NP_066 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 243 init1: 218 opt: 241 Z-score: 340.3 bits: 67.6 E(85289): 3.3e-12
Smith-Waterman score: 241; 41.1% identity (73.3% similar) in 90 aa overlap (2-89:1-90)
10 20 30 40 50
pF1KE1 MMGLSLAS-AVLLASL-LSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
: .: :. :::: .. : .. .: ..: .:::.:. . .: ... .: ::..::
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
. .::: ::::..::. : ..:::::.: :.
NP_001 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 255 init1: 233 opt: 237 Z-score: 334.9 bits: 66.6 E(85289): 6.5e-12
Smith-Waterman score: 237; 39.3% identity (73.0% similar) in 89 aa overlap (2-89:1-89)
10 20 30 40 50
pF1KE1 MMGLSLAS-AVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQ
: .: :. :::: .. . .:. ..: .:::.:. . .: ... .: ::..::.
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50
60 70 80 90
pF1KE1 RAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
.::: :::...::. : ..:::::.: :.
NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 245 init1: 216 opt: 231 Z-score: 326.8 bits: 65.1 E(85289): 1.8e-11
Smith-Waterman score: 231; 37.8% identity (76.8% similar) in 82 aa overlap (8-89:9-89)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQ
...:.:. : ... .:: . ::: : .::: . .. : .::..::.
NP_002 MKVSAAALAVILIATALCAPASASPYSSD-TTPCCFAYIARPLPRAHIKEYFYTSGKCSN
10 20 30 40 50
60 70 80 90
pF1KE1 RAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::.:.:.....::..:.::::..::. :.
NP_002 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 222 init1: 222 opt: 231 Z-score: 326.8 bits: 65.1 E(85289): 1.8e-11
Smith-Waterman score: 231; 45.0% identity (72.5% similar) in 80 aa overlap (6-85:8-86)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
:. .:.:.. : : .: ::: .:::.:. . :: ..: .: ::. ::
NP_002 MKLCVTVLSLLMLVAAFCSPAL-SAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
: ::.: :::.:.::. : ..:::.:.
NP_002 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 228 init1: 200 opt: 219 Z-score: 310.4 bits: 62.1 E(85289): 1.5e-10
Smith-Waterman score: 219; 39.1% identity (65.2% similar) in 92 aa overlap (2-89:1-91)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTAT----RGSDISKTCCFQYSHKPLPWTWVRSYEFTSNS
: .:.: :. . :... ::: : :: . ::: :. .: . .: :...
NP_116 MKISVA-AIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQ
10 20 30 40 50
60 70 80 90
pF1KE1 CSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::. ...: ::::..:::.: :::: ::. .:
NP_116 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
94 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:22:57 2016 done: Sun Nov 6 16:22:58 2016
Total Scan time: 4.240 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]