FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1585, 92 aa
  1>>>pF1KE1585 92 - 92 aa - 92 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4400+/-0.000473; mu= 14.9626+/- 0.029
 mean_var=67.3024+/-13.396, 0's: 0 Z-trim(116.7): 7  B-trim: 0 in 0/53
 Lambda= 0.156336
 statistics sampled from 17305 (17309) to 17305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.865), E-opt: 0.2 (0.532), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS46057.1 HCST gene_id:10870|Hs108|chr19         (  92)  610 144.5 8.9e-36
CCDS32998.1 HCST gene_id:10870|Hs108|chr19         (  93)  598 141.8 5.9e-35


>>CCDS46057.1 HCST gene_id:10870|Hs108|chr19              (92 aa)
 initn: 610 init1: 610 opt: 610  Z-score: 755.8  bits: 144.5 E(32554): 8.9e-36
Smith-Waterman score: 610; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KE1 MIHLGHILFLLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MIHLGHILFLLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVA
               10        20        30        40        50        60

               70        80        90  
pF1KE1 SLLIVGAVFLCARPRRSPAQDGKVYINMPGRG
       ::::::::::::::::::::::::::::::::
CCDS46 SLLIVGAVFLCARPRRSPAQDGKVYINMPGRG
               70        80        90  

>>CCDS32998.1 HCST gene_id:10870|Hs108|chr19              (93 aa)
 initn: 535 init1: 525 opt: 598  Z-score: 741.1  bits: 141.8 E(32554): 5.9e-35
Smith-Waterman score: 598; 98.9% identity (98.9% similar) in 93 aa overlap (1-92:1-93)

               10        20        30        40        50        60
pF1KE1 MIHLGHILFLLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MIHLGHILFLLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVA
               10        20        30        40        50        60

               70        80         90  
pF1KE1 SLLIVGAVFLCARPRRSPAQ-DGKVYINMPGRG
       :::::::::::::::::::: ::::::::::::
CCDS32 SLLIVGAVFLCARPRRSPAQEDGKVYINMPGRG
               70        80        90   




92 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:12:21 2016 done: Sun Nov  6 12:12:21 2016
 Total Scan time:  1.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]