FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1583, 89 aa
  1>>>pF1KE1583 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7338+/-0.000782; mu= 11.2552+/- 0.047
 mean_var=48.2340+/- 9.661, 0's: 0 Z-trim(105.6): 13  B-trim: 70 in 1/46
 Lambda= 0.184671
 statistics sampled from 8520 (8523) to 8520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.262), width:  16
 Scan time:  1.210

The best scores are:                                      opt bits E(32554)
CCDS11601.1 DYNLL2 gene_id:140735|Hs108|chr17      (  89)  600 166.9 1.5e-42
CCDS9200.1 DYNLL1 gene_id:8655|Hs108|chr12         (  89)  568 158.4 5.4e-40
CCDS13979.1 DNAL4 gene_id:10126|Hs108|chr22        ( 105)  204 61.4 9.7e-11


>>CCDS11601.1 DYNLL2 gene_id:140735|Hs108|chr17           (89 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 877.6  bits: 166.9 E(32554): 1.5e-42
Smith-Waterman score: 600; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
CCDS11 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>CCDS9200.1 DYNLL1 gene_id:8655|Hs108|chr12              (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 831.5  bits: 158.4 E(32554): 5.4e-40
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
CCDS92 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
CCDS92 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>CCDS13979.1 DNAL4 gene_id:10126|Hs108|chr22             (105 aa)
 initn: 225 init1: 148 opt: 204  Z-score: 306.3  bits: 61.4 E(32554): 9.7e-11
Smith-Waterman score: 204; 33.7% identity (78.3% similar) in 83 aa overlap (7-87:21-103)

                             10        20        30         40     
pF1KE1               MSDRKAVIKNADMSEDMQQDAVDCATQAMEKY-NIEKDIAAYIKKE
                           .....:: :.:. ....  . : ::. : ... : .::. 
CCDS13 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET
               10        20        30        40        50        60

          50        60        70         80         
pF1KE1 FDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKSG
       .:::.. .:: ..:..::  .:::.:...:.:.:  .:. ..:  
CCDS13 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS
               70        80        90       100     




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:30:34 2016 done: Mon Nov  7 15:30:34 2016
 Total Scan time:  1.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]