Result of FASTA (ccds) for
pFN21AE1582
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1582, 89 aa
1>>>pF1KE1582 89 - 89 aa - 89 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6472+/-0.000526; mu= 12.5889+/- 0.032
mean_var=58.2072+/-11.365, 0's: 0 Z-trim(113.6): 52 B-trim: 24 in 1/53
Lambda= 0.168107
statistics sampled from 14173 (14226) to 14173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.437), width: 16
Scan time: 1.320
The best scores are: opt bits E(32554)
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 ( 89) 616 156.3 2.4e-39
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 375 97.8 9.5e-22
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 371 96.9 1.9e-21
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 283 75.5 4.9e-15
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 271 72.6 3.8e-14
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 267 71.7 8.3e-14
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 ( 87) 258 69.4 3.2e-13
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 246 66.5 2.5e-12
>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 (89 aa)
initn: 616 init1: 616 opt: 616 Z-score: 820.0 bits: 156.3 E(32554): 2.4e-39
Smith-Waterman score: 616; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE1 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGVI
10 20 30 40 50 60
70 80
pF1KE1 LLTKRGRQICADPNKKWVQKYISDLKLNA
:::::::::::::::::::::::::::::
CCDS11 LLTKRGRQICADPNKKWVQKYISDLKLNA
70 80
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 387 init1: 319 opt: 375 Z-score: 503.9 bits: 97.8 E(32554): 9.5e-22
Smith-Waterman score: 375; 60.9% identity (81.5% similar) in 92 aa overlap (1-89:1-92)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
:. .::: ::.:::::: : . .. . ::. ::: ::::.::.:: ::: :: ::
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
10 20 30 40 50 60
60 70 80
pF1KE1 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
:::.::::.::.::::...:::::.:::.:.:
CCDS11 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 394 init1: 319 opt: 371 Z-score: 498.6 bits: 96.9 E(32554): 1.9e-21
Smith-Waterman score: 371; 60.2% identity (79.6% similar) in 93 aa overlap (1-89:1-93)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC----SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPK
:. .::: ::.:::::: : .. . ::. ::: ::::.::.:: ::: :: :
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.::.:::::::.::::...:::::.:::.:.:
CCDS32 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 295 init1: 261 opt: 283 Z-score: 383.3 bits: 75.5 E(32554): 4.9e-15
Smith-Waterman score: 283; 43.5% identity (76.1% similar) in 92 aa overlap (1-88:1-92)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCS---CAQVGTNKEL-CCLVYTSWQIPQKFIVDYSETSPQCPK
:: ...: .:. . :.:: : .:.. ::. ::. ..:..:.::: ::: : .
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.:.. :::..:.::::...:::.:. ::.::
CCDS11 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 290 init1: 267 opt: 271 Z-score: 367.6 bits: 72.6 E(32554): 3.8e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-88:1-93)
10 20 30 40 50
pF1KE1 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
:: ..:: . :. :.:: . .. .. . ::..::...::.. :.:: ::. ::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80
pF1KE1 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:::....::::...:..:. :::: ::.:.: :
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 290 init1: 267 opt: 267 Z-score: 361.3 bits: 71.7 E(32554): 8.3e-14
Smith-Waterman score: 267; 52.5% identity (88.1% similar) in 59 aa overlap (30-88:51-109)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGV
::..::...::.. :.:: ::. :: :::.
CCDS45 KTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGI
30 40 50 60 70 80
60 70 80
pF1KE1 ILLTKRGRQICADPNKKWVQKYISDLKLNA
...::::...:..:. :::: ::.:.: :
CCDS45 VFITKRGHSVCTNPSDKWVQDYIKDMKEN
90 100
>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 (87 aa)
initn: 280 init1: 128 opt: 258 Z-score: 350.9 bits: 69.4 E(32554): 3.2e-13
Smith-Waterman score: 258; 42.4% identity (71.7% similar) in 92 aa overlap (1-88:1-87)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCS---CAQVGTNKEL-CCLVYTSWQIPQKFIVDYSETSPQCPK
:: ...: .:: . :.:: : .:.. ::. ::. ..:..:.::: ::: : .
CCDS32 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.:. :.:.::::...:::.:. ::.::
CCDS32 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 249 init1: 209 opt: 246 Z-score: 334.9 bits: 66.5 E(32554): 2.5e-12
Smith-Waterman score: 246; 38.5% identity (73.6% similar) in 91 aa overlap (1-88:1-91)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
:: :::: :.. . ::: : . ... ::..: . .:. : .: :: .: .:
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
10 20 30 40 50 60
60 70 80
pF1KE1 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
.:...:...::.::.:.::::..::..:...
CCDS11 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
70 80 90
89 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:52:26 2016 done: Sun Nov 6 13:52:26 2016
Total Scan time: 1.320 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]