FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1581, 89 aa
  1>>>pF1KE1581 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9965+/-0.000336; mu= 10.1129+/- 0.021
 mean_var=53.5214+/-10.640, 0's: 0 Z-trim(113.9): 5  B-trim: 0 in 0/49
 Lambda= 0.175312
 statistics sampled from 23518 (23523) to 23518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.276), width:  16
 Scan time:  3.830

The best scores are:                                      opt bits E(85289)
NP_001032583 (OMIM: 601562) dynein light chain 1,  (  89)  604 160.2 4.1e-40
NP_001032584 (OMIM: 601562) dynein light chain 1,  (  89)  604 160.2 4.1e-40
NP_003737 (OMIM: 601562) dynein light chain 1, cyt (  89)  604 160.2 4.1e-40
NP_542408 (OMIM: 608942) dynein light chain 2, cyt (  89)  568 151.1 2.3e-37
NP_005731 (OMIM: 610565,616059) dynein light chain ( 105)  213 61.3 2.8e-10


>>NP_001032583 (OMIM: 601562) dynein light chain 1, cyto  (89 aa)
 initn: 604 init1: 604 opt: 604  Z-score: 841.2  bits: 160.2 E(85289): 4.1e-40
Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_001032584 (OMIM: 601562) dynein light chain 1, cyto  (89 aa)
 initn: 604 init1: 604 opt: 604  Z-score: 841.2  bits: 160.2 E(85289): 4.1e-40
Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_003737 (OMIM: 601562) dynein light chain 1, cytopla  (89 aa)
 initn: 604 init1: 604 opt: 604  Z-score: 841.2  bits: 160.2 E(85289): 4.1e-40
Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_003 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_542408 (OMIM: 608942) dynein light chain 2, cytopla  (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 792.0  bits: 151.1 E(85289): 2.3e-37
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
NP_542 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
NP_542 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>NP_005731 (OMIM: 610565,616059) dynein light chain 4,   (105 aa)
 initn: 237 init1: 148 opt: 213  Z-score: 305.6  bits: 61.3 E(85289): 2.8e-10
Smith-Waterman score: 213; 36.1% identity (79.5% similar) in 83 aa overlap (7-87:21-103)

                             10        20        30        40      
pF1KE1               MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKE-
                           .....:: :::. ...:  . : ::.. ... ::.. :: 
NP_005 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET
               10        20        30        40        50        60

          50        60        70         80         
pF1KE1 FDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKSG
       .:::.. .:: ..:..::  .:::.:...:.:.:  .:. ..:  
NP_005 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS
               70        80        90       100     




89 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:41:28 2016 done: Sun Nov  6 14:41:28 2016
 Total Scan time:  3.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]