FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1578, 64 aa
  1>>>pF1KE1578 64 - 64 aa - 64 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5564+/-0.000225; mu= 10.7937+/- 0.014
 mean_var=56.1651+/-10.986, 0's: 0 Z-trim(124.6): 19  B-trim: 67 in 1/53
 Lambda= 0.171136
 statistics sampled from 46550 (46569) to 46550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.546), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(85289)
NP_004933 (OMIM: 602215) beta-defensin 4A precurso (  64)  476 123.9 1.8e-29
NP_061131 (OMIM: 606611) beta-defensin 103 precurs (  67)  187 52.5 5.6e-08
NP_005209 (OMIM: 602056) beta-defensin 1 prepropro (  68)  123 36.7  0.0032


>>NP_004933 (OMIM: 602215) beta-defensin 4A precursor [H  (64 aa)
 initn: 476 init1: 476 opt: 476  Z-score: 650.2  bits: 123.9 E(85289): 1.8e-29
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
               10        20        30        40        50        60

           
pF1KE1 CKKP
       ::::
NP_004 CKKP
           

>>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [  (67 aa)
 initn: 217 init1: 111 opt: 187  Z-score: 264.3  bits: 52.5 E(85289): 5.6e-08
Smith-Waterman score: 187; 42.4% identity (65.2% similar) in 66 aa overlap (1-63:1-65)

               10        20        30           40        50       
pF1KE1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG
       ::. ::::..::.::.:.::  ::: . .    :   :. :  . :  . .::: :.  :
NP_061 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG
               10        20         30        40        50         

        60     
pF1KE1 TKCCKKP 
        :::..  
NP_061 RKCCRRKK
      60       

>>NP_005209 (OMIM: 602056) beta-defensin 1 preproprotein  (68 aa)
 initn: 121 init1:  99 opt: 123  Z-score: 178.8  bits: 36.7 E(85289): 0.0032
Smith-Waterman score: 123; 39.7% identity (54.4% similar) in 68 aa overlap (1-62:1-68)

               10          20            30        40        50    
pF1KE1 MRVLYLLFSFLFIFL--MPLPGVF-GGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG
       ::. :::.  : ..:  :   : :  :.:   :  .:..::. :    ::   :  ::: 
NP_005 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY
               10        20        30        40        50        60

           60    
pF1KE1 LPGTKCCKKP
          .::::  
NP_005 RGKAKCCK  
                 




64 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:33:17 2016 done: Mon Nov  7 15:33:18 2016
 Total Scan time:  3.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]